initial commit

recipes/mapping/bowtie2/Singularity.bowtie2-241cv1

+Bootstrap: docker
+From: biocontainers/bowtie2:v2.4.1_cv1
+
+%runscript
+    echo "Running container biocontainers/bowtie2:v2.4.1_cv1, Bowtie v2.4.1"
+    exec /bin/bash "$@"
+
+%post
+    mkdir /cluster /work /tsd /projects
+
+%labels
+    Author Nicolas Descostes

recipes/mapping/bowtie2/Singularity.bowtie2-245

+BootStrap: debootstrap
+OSVersion: hirsute
+MirrorURL: http://us.archive.ubuntu.com/ubuntu/
+
+%help
+    This singularity install bowtie2 v2.4.5
+
+%post
+
+    # ~~~~~~ General setup and folder creation ~~~~~~ #
+    
+    apt-get update && apt-get install -y wget bzip2
+    
+    # ~~~~~ MINICONDA 3.4.0.5 ~~~~~ #
+    wget https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh && \
+    bash Miniconda3-4.7.12.1-Linux-x86_64.sh -b -p /conda && \
+    rm -f Miniconda3-4.7.12.1-Linux-x86_64.sh
+    export PATH="/conda/bin:${PATH}"
+       
+    # ~~~~~ bowtie2 2.4.5 ~~~~~ #
+    conda install -y -c bioconda bowtie2=2.4.5
+    
+%environment
+    export PATH="${PATH}:/conda/bin"
+
+%labels
+    Author Nicolas Descostes
+    Version v0.0.1