initial commit

.gitlab-ci.yml

+# See https://docs.gitlab.com/ee/ci/yaml/index.html for all available options
+
+stages:
+  - buildPushImage
+
+image: 
+    name: quay.io/singularity/singularity:v3.8.4
+    entrypoint: [""]
+
+#####################
+## Quality control
+#####################
+
+
+build-push-singularity-fastqc:
+  tags:
+    - docker7
+  stage: buildPushImage
+  variables:
+    BASENAME: fastqc
+    TAG: 0119
+    RECIPE_PATH: recipes/quality-control/
+  script:
+    - singularity build container.sif $RECIPE_PATH/Singularity.$BASENAME-$TAG
+    - echo $CI_COMMIT_SHORT_SHA
+    - singularity push --docker-username gitlab-ci-token --docker-password $CI_JOB_TOKEN container.sif oras://"$CI_REGISTRY_IMAGE"/$BASENAME:$TAG
+  only:
+    changes:
+      - recipes/quality-control/Singularity.fastqc-0119