deletion

recipes/R-packages/snakemake-pipelines/ChIPSeq/Singularity.snakemakeChIPSeq-v001

-BootStrap: docker
-From: ubuntu:bionic
-
-%help
-
-    This singularity installs R v 4.1.1 and required packages for the official ChIPSeq snakemake pipeline
-
-%post
-    # ~~~~~~ General setup and folder creation ~~~~~~ #
-    
-    apt-get update && apt-get install -y wget build-essential libxml2
-    
-    export LC_ALL=C
-    export LC_CTYPE=C 
-    export LC_COLLATE=C 
-    export LC_TIME=C
-    export LC_MESSAGES=C
-    export LC_MONETARY=C
-    export LC_PAPER=C 
-    export LC_MEASUREMENT=C
-    
-    # ~~~~~ MINICONDA ~~~~~ #
-    wget https://repo.continuum.io/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh && \
-    bash Miniconda3-4.7.12.1-Linux-x86_64.sh -b -p /conda && \
-    rm -f Miniconda3-4.7.12.1-Linux-x86_64.sh
-    export PATH="/conda/bin:${PATH}"
-    
-    # ~~~~~ R v 4.1.1 ~~~~~ #
-    conda install -c conda-forge r-base=4.1.1
-    
-    # ~~~~~ R packages ~~~~~ #
-    R --slave -e 'install.packages("BiocManager", repos="https://cloud.r-project.org/")'
-    R --slave -e 'BiocManager::install("GenomeInfoDb")'
-    R --slave -e 'BiocManager::install("stringr")'
-    R --slave -e 'BiocManager::install("csaw")'
-    
-%environment
-    export PATH="${PATH}:/conda/bin"
-    export LC_ALL=C
-    export LC_CTYPE=C 
-    export LC_COLLATE=C 
-    export LC_TIME=C
-    export LC_MESSAGES=C
-    export LC_MONETARY=C
-    export LC_PAPER=C 
-    export LC_MEASUREMENT=C
-
-%labels
-    Author Nicolas Descostes
-    Version v0.0.1