Commits · 0cce040f51a749d1740ee58880e95bec8b8d1214 · ALMF / SVLT · GitLab

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Oct 01, 2024
- Repaired assumed prefix of serialized ROI set · 0cce040f
  Christopher Randolph Rhodes authored 5 months ago
  
  0cce040f
- Test configuration can handle Windows paths encoded in /c/dir/to format e.g. by GitBash · ce71653e
  Christopher Randolph Rhodes authored 5 months ago
  
  ce71653e
Aug 13, 2024
- Consolidated some recurring steps in API testing · 24ab120e
  Christopher Randolph Rhodes authored 7 months ago
  
  24ab120e
Jul 08, 2024
- Fixed typing error in root path · 9411cf93
  Christopher Randolph Rhodes authored 8 months ago
  
  9411cf93
- Correct error in test configuration · ab1ee436
  Christopher Randolph Rhodes authored 8 months ago
  
  ab1ee436
Jul 05, 2024
- Cleanup up testing conf file · d2a9afd6
  Christopher Randolph Rhodes authored 8 months ago
  
  d2a9afd6
- Moved test configuration to its own module · d8661a0d
  Christopher Randolph Rhodes authored 8 months ago
  
  d8661a0d
Jul 03, 2024
- Moved test configuration into tests folder · 3a91b12c
  Christopher Randolph Rhodes authored 8 months ago
  
  3a91b12c
Jul 01, 2024
- Allow optional test output path via environmental variable · 74d39c6c
  Christopher Randolph Rhodes authored 8 months ago
  
  74d39c6c
Apr 26, 2024
- ilastik workflow now interprets channel=None to use all input channels · ff6547b2
  Christopher Randolph Rhodes authored 11 months ago
  
  ff6547b2
- Confirms that ilastik pixel classification already works with multichannel input · 0bd3a302
  Christopher Randolph Rhodes authored 11 months ago
  
  0bd3a302
Apr 19, 2024
- Rebuilding release branch to resolve conflicts where master is ahead of staging · 141e9775
  Christopher Randolph Rhodes authored 11 months ago and Christopher Randolph Rhodes committed 11 months ago
  
  141e9775
Apr 03, 2024
- Revert "Merge branch 'issue0027-serialize-roiset' into 'master'" · 8dbede73
  Christopher Randolph Rhodes authored 11 months ago
  
  This reverts merge request !16
  8dbede73
Mar 28, 2024
- Test coverage with 3D object identities map · d9c4d334
  Christopher Randolph Rhodes authored 1 year ago
  
  d9c4d334
Feb 19, 2024
- Consolidating RoiSet test data into base test configuration · afed75b6
  Christopher Randolph Rhodes authored 1 year ago
  
  afed75b6
Feb 02, 2024
- Adapted folder structure from master · d09fe9c9
  Christopher Randolph Rhodes authored 1 year ago
  
  d09fe9c9
- Change to folder structure on master · 83f63a7f
  Christopher Randolph Rhodes authored 1 year ago
  
  83f63a7f
Dec 21, 2023
- Tests pass in this project structure · 3462b137
  Christopher Randolph Rhodes authored 1 year ago
  
  3462b137
Dec 20, 2023
- Test and example notebook that covers object classification from binary segmentation · a372c464
  Christopher Randolph Rhodes authored 1 year ago
  
  a372c464
Nov 02, 2023
- Change to default data directory · e276916c
  Christopher Randolph Rhodes authored 1 year ago
  
  e276916c
- Changed to ~/model_server, not ~/model-server · 24d1cf0f
  Christopher Randolph Rhodes authored 1 year ago
  
  24d1cf0f
Oct 31, 2023
- Merge in ilastik API support for segmentation-to-object workflow · a0b7809f
  Christopher Randolph Rhodes authored 1 year ago
  
  a0b7809f
- Include endpoint and testing for ilastik model that takes segmentations and solves object maps · bc76a8c4
  Christopher Randolph Rhodes authored 1 year ago
  
  bc76a8c4
Oct 22, 2023
- Querying image scale in workflow output, but hitting error · 97703855
  Christopher Randolph Rhodes authored 1 year ago
  
  97703855
- Expose image pixel scale to Czi accessor · 60a3e66e
  Christopher Randolph Rhodes authored 1 year ago
  
  60a3e66e
Oct 16, 2023
- Can set input dataset parameters · f6429ae3
  Christopher Randolph Rhodes authored 1 year ago
  
  f6429ae3
- Accomodate mono TIFs; support 'uint8' binary masks · 87fb2350
  Christopher Randolph Rhodes authored 1 year ago
  
  87fb2350
Oct 12, 2023
- Export z-stack of masks, encoded with object class from EcoTaxa table · 05af7b71
  Christopher Randolph Rhodes authored 1 year ago
  
  05af7b71
- Support mono PNG too · a857e683
  Christopher Randolph Rhodes authored 1 year ago
  
  a857e683
- Added support for RGB PNG · 735ca41a
  Christopher Randolph Rhodes authored 1 year ago
  
  735ca41a
Sep 27, 2023
- Added generic Tif accessor · 30e33bad
  Christopher Randolph Rhodes authored 1 year ago
  
  30e33bad
Sep 05, 2023
- Cleaned up paths to test data · 52038906
  Christopher Randolph Rhodes authored 1 year ago
  
  52038906
- Moved ilastik configuration into its own file · ef4c8943
  Christopher Randolph Rhodes authored 1 year ago
  
  ef4c8943
Sep 01, 2023
- Pass notebook filename and not path to load an ilastik model; assumes project... · 7d7f0552
  Christopher Randolph Rhodes authored 1 year ago
  
  Pass notebook filename and not path to load an ilastik model; assumes project files are in conf.server.paths['ilastik']
  7d7f0552
Aug 30, 2023
- ilastik functional checks passed; confirmed accurate image outputs · 3ec1f38f
  Christopher Randolph Rhodes authored 1 year ago
  
  3ec1f38f
- Refined workflow class check · 4d369c51
  Christopher Randolph Rhodes authored 1 year ago
  
  4d369c51
Aug 28, 2023
- Successfully loaded ilastik shell within test environment · 223aebff
  Christopher Randolph Rhodes authored 1 year ago
  
  223aebff
- Successfully tested calling inference over API · e2e7ea21
  Christopher Randolph Rhodes authored 1 year ago
  
  e2e7ea21
Aug 23, 2023
- Abstracted away inference logic from API, successfully tested · c73727c0
  Christopher Randolph Rhodes authored 1 year ago
  
  c73727c0
- Cleaned up event logging and manifest dump file · 38948700
  Christopher Randolph Rhodes authored 1 year ago
  
  38948700