Commits · 0e1f1965963b086a55310b69be8142068108bb2e · ALMF / SVLT · GitLab

Snippets Groups Projects

Feb 07, 2025
- Allow writing things other than patches in roiset pipeline wrapper · 0e1f1965
  Christopher Randolph Rhodes authored 1 month ago
  
  0e1f1965
- PhenoBase is now written automatically · 2ce6a510
  Christopher Randolph Rhodes authored 1 month ago
  
  2ce6a510
- Dump full tasks JSON for each iteration on stack index · 54e397d2
  Christopher Randolph Rhodes authored 1 month ago
  
  54e397d2
- Dump full tasks JSON for each iteration on stack index · 5d7b4cf3
  Christopher Randolph Rhodes authored 1 month ago
  
  5d7b4cf3
- Merge branch 'patch_features_on_empty_roiset' into 'staging' · 32da3524
  Christopher Randolph Rhodes authored 1 month ago
  
  Handling of feature extraction on empty RoiSets See merge request rhodes/model_server!100
  32da3524
- Handling of feature extraction on empty RoiSets · 0f5f4bd8
  Christopher Randolph Rhodes authored 1 month ago
  
  0f5f4bd8
- Merge branch 'patch_phenobase_runner_coords' into 'staging' · 36499d70
  Christopher Randolph Rhodes authored 1 month ago
  
  Unique stack coordinates in PhenoBase runner client See merge request rhodes/model_server!99
  36499d70
- Harmonized how phenobase index is written to match that of RoiSet dataframes · 5f7eb16c
  Christopher Randolph Rhodes authored 1 month ago
  
  5f7eb16c
- Check that all (not any) coordinates match before raising exception · b24242c6
  Christopher Randolph Rhodes authored 1 month ago
  
  b24242c6
- Only alphanumeric in coord keys · c7374706
  Christopher Randolph Rhodes authored 1 month ago
  
  c7374706
- Return empty list if no phenobase is initiated yet · 28a2c17a
  Christopher Randolph Rhodes authored 1 month ago
  
  28a2c17a
- Option to write stack_id and position to a pipeline parameter · a9fda0d2
  Christopher Randolph Rhodes authored 1 month ago
  
  a9fda0d2
- Option to write stack_id and position to a pipeline parameter · d3f894df
  Christopher Randolph Rhodes authored 1 month ago
  
  d3f894df
- Merge branch 'patch_phenobase_client_args' into 'staging' · 43634162
  Christopher Randolph Rhodes authored 1 month ago
  
  Repaired PhenoBase startup without labels_csv arg See merge request rhodes/model_server!98
  43634162
- Debugging init client without_labels_csv · 1b5dec4c
  Christopher Randolph Rhodes authored 1 month ago
  
  1b5dec4c
- Allow optional arg to phenobase client · a26bb54c
  Christopher Randolph Rhodes authored 1 month ago
  
  a26bb54c
Feb 06, 2025
- Merge branch 'issue0078' into 'staging' · a2cd78bb
  Christopher Randolph Rhodes authored 1 month ago
  
  Keep timer results after appending PipelineTrace objects See merge request rhodes/model_server!97
  a2cd78bb
- Appending a trace also inherits source trace's timer · bf23d30e
  Christopher Randolph Rhodes authored 1 month ago
  
  bf23d30e
- Merge branch 'dev_roiset_features' into 'staging' · e19c4a7e
  Christopher Randolph Rhodes authored 1 month ago
  
  Dev roiset features See merge request rhodes/model_server!96
  e19c4a7e
- Tests pass · 9d0c35c6
  Christopher Randolph Rhodes authored 1 month ago
  
  9d0c35c6
- Automatically update channel number based on accessor order · c3a35e69
  Christopher Randolph Rhodes authored 1 month ago
  
  c3a35e69
- Segment on ch 2, validate on ch 1 · 7b8cb794
  Christopher Randolph Rhodes authored 1 month ago
  
  7b8cb794
- Use DataFrame iterator for feature extraction · f86e488c
  Christopher Randolph Rhodes authored 1 month ago
  
  f86e488c
- RoiSet knows index of each patch in PatchStacks · 77659d95
  Christopher Randolph Rhodes authored 1 month ago
  
  77659d95
- Passes on 2d · 878404c0
  Christopher Randolph Rhodes authored 1 month ago
  
  878404c0
- Iterating on patch stacks, not on object identities image · fc55cb21
  Christopher Randolph Rhodes authored 1 month ago
  
  fc55cb21
- Added label-encoded patch masks · 1cbabad8
  Christopher Randolph Rhodes authored 1 month ago
  
  1cbabad8
- Functional prototype of regionsprops features · e97808b6
  Christopher Randolph Rhodes authored 1 month ago
  
  e97808b6
- Added utility function for moving channel to last position in ndarray · 685a5807
  Christopher Randolph Rhodes authored 1 month ago
  
  685a5807
- Remapped ROI pipelines · cf9799a4
  Christopher Randolph Rhodes authored 1 month ago
  
  cf9799a4
- Organizing tests accordingly, still some-cross references from base package to subpackages · 7918055e
  Christopher Randolph Rhodes authored 1 month ago
  
  7918055e
- RoiSet-related things go into a subpackage · 74aca3ed
  Christopher Randolph Rhodes authored 1 month ago
  
  74aca3ed
- Reorganizing things in RoiSet · d8cb3db9
  Christopher Randolph Rhodes authored 1 month ago
  
  d8cb3db9
- Reorganizing things in RoiSet · 47fdb28d
  Christopher Randolph Rhodes authored 1 month ago
  
  47fdb28d
- Reorganizing things in RoiSet · d4ce55f1
  Christopher Randolph Rhodes authored 1 month ago
  
  d4ce55f1
- read CSVs via a utility method · a3736cc9
  Christopher Randolph Rhodes authored 1 month ago
  
  a3736cc9
- Simplify access to RoiSet dataframe outside of class · a4f81c46
  Christopher Randolph Rhodes authored 1 month ago
  
  a4f81c46
- PhenoBase no longer uses tuple columns, as this messes up starlette encoding check · 8adacdc7
  Christopher Randolph Rhodes authored 1 month ago
  
  8adacdc7
- Repaired test · e05c0677
  Christopher Randolph Rhodes authored 1 month ago
  
  e05c0677
- Merge branch 'dev_batch_runner' into 'staging' · 2646b1fe
  Christopher Randolph Rhodes authored 1 month ago
  
  BatchRunner file parsing See merge request rhodes/model_server!95
  2646b1fe