Commits · 0f5f4bd836a37aa63f73cec66ef2ca4bb0f6bcd6 · ALMF / SVLT · GitLab

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Feb 07, 2025
- Handling of feature extraction on empty RoiSets · 0f5f4bd8
  Christopher Randolph Rhodes authored 1 month ago
  
  0f5f4bd8
- Harmonized how phenobase index is written to match that of RoiSet dataframes · 5f7eb16c
  Christopher Randolph Rhodes authored 1 month ago
  
  5f7eb16c
- Check that all (not any) coordinates match before raising exception · b24242c6
  Christopher Randolph Rhodes authored 1 month ago
  
  b24242c6
- Only alphanumeric in coord keys · c7374706
  Christopher Randolph Rhodes authored 1 month ago
  
  c7374706
- Return empty list if no phenobase is initiated yet · 28a2c17a
  Christopher Randolph Rhodes authored 1 month ago
  
  28a2c17a
- Option to write stack_id and position to a pipeline parameter · a9fda0d2
  Christopher Randolph Rhodes authored 1 month ago
  
  a9fda0d2
- Option to write stack_id and position to a pipeline parameter · d3f894df
  Christopher Randolph Rhodes authored 1 month ago
  
  d3f894df
- Debugging init client without_labels_csv · 1b5dec4c
  Christopher Randolph Rhodes authored 1 month ago
  
  1b5dec4c
- Allow optional arg to phenobase client · a26bb54c
  Christopher Randolph Rhodes authored 1 month ago
  
  a26bb54c
Feb 06, 2025
- Appending a trace also inherits source trace's timer · bf23d30e
  Christopher Randolph Rhodes authored 1 month ago
  
  bf23d30e
- Tests pass · 9d0c35c6
  Christopher Randolph Rhodes authored 1 month ago
  
  9d0c35c6
- Automatically update channel number based on accessor order · c3a35e69
  Christopher Randolph Rhodes authored 1 month ago
  
  c3a35e69
- Segment on ch 2, validate on ch 1 · 7b8cb794
  Christopher Randolph Rhodes authored 1 month ago
  
  7b8cb794
- Use DataFrame iterator for feature extraction · f86e488c
  Christopher Randolph Rhodes authored 1 month ago
  
  f86e488c
- RoiSet knows index of each patch in PatchStacks · 77659d95
  Christopher Randolph Rhodes authored 1 month ago
  
  77659d95
- Passes on 2d · 878404c0
  Christopher Randolph Rhodes authored 1 month ago
  
  878404c0
- Iterating on patch stacks, not on object identities image · fc55cb21
  Christopher Randolph Rhodes authored 1 month ago
  
  fc55cb21
- Added label-encoded patch masks · 1cbabad8
  Christopher Randolph Rhodes authored 1 month ago
  
  1cbabad8
- Functional prototype of regionsprops features · e97808b6
  Christopher Randolph Rhodes authored 1 month ago
  
  e97808b6
- Added utility function for moving channel to last position in ndarray · 685a5807
  Christopher Randolph Rhodes authored 1 month ago
  
  685a5807
- Remapped ROI pipelines · cf9799a4
  Christopher Randolph Rhodes authored 1 month ago
  
  cf9799a4
- Organizing tests accordingly, still some-cross references from base package to subpackages · 7918055e
  Christopher Randolph Rhodes authored 1 month ago
  
  7918055e
- RoiSet-related things go into a subpackage · 74aca3ed
  Christopher Randolph Rhodes authored 1 month ago
  
  74aca3ed
- Reorganizing things in RoiSet · d8cb3db9
  Christopher Randolph Rhodes authored 1 month ago
  
  d8cb3db9
- Reorganizing things in RoiSet · 47fdb28d
  Christopher Randolph Rhodes authored 1 month ago
  
  47fdb28d
- Reorganizing things in RoiSet · d4ce55f1
  Christopher Randolph Rhodes authored 1 month ago
  
  d4ce55f1
- read CSVs via a utility method · a3736cc9
  Christopher Randolph Rhodes authored 1 month ago
  
  a3736cc9
- Simplify access to RoiSet dataframe outside of class · a4f81c46
  Christopher Randolph Rhodes authored 1 month ago
  
  a4f81c46
- PhenoBase no longer uses tuple columns, as this messes up starlette encoding check · 8adacdc7
  Christopher Randolph Rhodes authored 1 month ago
  
  8adacdc7
- Batch runner allows pattern matching of subdirectories · 3d9bd7fa
  Christopher Randolph Rhodes authored 1 month ago
  
  3d9bd7fa
Feb 05, 2025
- PhenoBase tests pass · 9ffb6137
  Christopher Randolph Rhodes authored 1 month ago
  
  9ffb6137
- Looking to classifications grouping for labels · 794ac163
  Christopher Randolph Rhodes authored 1 month ago
  
  794ac163
- Cleaned up coordinate indexing of RoiSets in PhenoBase · 4d9fa2bf
  Christopher Randolph Rhodes authored 1 month ago
  
  4d9fa2bf
- RoiSet tests pass on multiindex refactor · af8f4bf5
  Christopher Randolph Rhodes authored 1 month ago
  
  af8f4bf5
- Need to set using bracket notation in multiindex columns · a392c1c0
  Christopher Randolph Rhodes authored 1 month ago
  
  a392c1c0
- Refactoring to multiindex on annotators, etc. · fb61aed7
  Christopher Randolph Rhodes authored 1 month ago
  
  fb61aed7
- Updating to multiindex references · 2aadaf85
  Christopher Randolph Rhodes authored 1 month ago
  
  2aadaf85
- Updating to multiindex references · 7fb9ad54
  Christopher Randolph Rhodes authored 1 month ago
  
  7fb9ad54
- Stopped using RoiSet as iterator · 133e084c
  Christopher Randolph Rhodes authored 1 month ago
  
  133e084c
- Use df.index for label in map · e2716d88
  Christopher Randolph Rhodes authored 1 month ago
  
  e2716d88