Commits · 0f5f4bd836a37aa63f73cec66ef2ca4bb0f6bcd6 · ALMF / SVLT · GitLab

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Feb 07, 2025
- Handling of feature extraction on empty RoiSets · 0f5f4bd8
  Christopher Randolph Rhodes authored 1 month ago
  
  0f5f4bd8
Feb 06, 2025
- RoiSet knows index of each patch in PatchStacks · 77659d95
  Christopher Randolph Rhodes authored 1 month ago
  
  77659d95
- Added label-encoded patch masks · 1cbabad8
  Christopher Randolph Rhodes authored 1 month ago
  
  1cbabad8
- RoiSet-related things go into a subpackage · 74aca3ed
  Christopher Randolph Rhodes authored 1 month ago
  
  74aca3ed
- Reorganizing things in RoiSet · d8cb3db9
  Christopher Randolph Rhodes authored 1 month ago
  
  d8cb3db9
- Reorganizing things in RoiSet · 47fdb28d
  Christopher Randolph Rhodes authored 1 month ago
  
  47fdb28d
- Reorganizing things in RoiSet · d4ce55f1
  Christopher Randolph Rhodes authored 1 month ago
  
  d4ce55f1
- read CSVs via a utility method · a3736cc9
  Christopher Randolph Rhodes authored 1 month ago
  
  a3736cc9
- Simplify access to RoiSet dataframe outside of class · a4f81c46
  Christopher Randolph Rhodes authored 1 month ago
  
  a4f81c46
Feb 05, 2025
- RoiSet tests pass on multiindex refactor · af8f4bf5
  Christopher Randolph Rhodes authored 1 month ago
  
  af8f4bf5
- Need to set using bracket notation in multiindex columns · a392c1c0
  Christopher Randolph Rhodes authored 1 month ago
  
  a392c1c0
- Refactoring to multiindex on annotators, etc. · fb61aed7
  Christopher Randolph Rhodes authored 1 month ago
  
  fb61aed7
- Updating to multiindex references · 2aadaf85
  Christopher Randolph Rhodes authored 1 month ago
  
  2aadaf85
- Updating to multiindex references · 7fb9ad54
  Christopher Randolph Rhodes authored 1 month ago
  
  7fb9ad54
- Use df.index for label in map · e2716d88
  Christopher Randolph Rhodes authored 1 month ago
  
  e2716d88
- join and drop calls are scrambling index · 8caa2e95
  Christopher Randolph Rhodes authored 1 month ago
  
  8caa2e95
- Classifications columns use MultiIndex · a2b6a848
  Christopher Randolph Rhodes authored 1 month ago
  
  a2b6a848
- Use .apply notation instead of .itertuples · fe396e25
  Christopher Randolph Rhodes authored 1 month ago
  
  fe396e25
- Chasing down errors with RoiSet multiindex table · 52a08f41
  Christopher Randolph Rhodes authored 1 month ago
  
  52a08f41
Jan 22, 2025
- Tests also cover overlapping segmentations with nonzero ROI index · d7233af5
  Christopher Randolph Rhodes authored 2 months ago
  
  d7233af5
- Repaired indexing error in cases of overlapping bounding boxes · c556e372
  Christopher Randolph Rhodes authored 2 months ago
  
  c556e372
- Recreated error from label transfer by overlap · 96a366e9
  Christopher Randolph Rhodes authored 2 months ago
  
  96a366e9
Dec 10, 2024
- Export products no longer throw exceptions when called on empty RoiSet · 583c415b
  Christopher Randolph Rhodes authored 3 months ago
  
  583c415b
- Chose to disallow create of empty patchstack; test asserts this will throw an exception · 22a66be9
  Christopher Randolph Rhodes authored 3 months ago
  
  22a66be9
Dec 07, 2024
- Add option to get MIP of patch mask · c744a6d7
  Christopher Randolph Rhodes authored 3 months ago
  
  c744a6d7
- Getting a patch mask can optionally update patch focus · ee6740a1
  Christopher Randolph Rhodes authored 3 months ago
  
  ee6740a1
- export_patch_masks now return pd.Series · da5c1dc5
  Christopher Randolph Rhodes authored 3 months ago
  
  da5c1dc5
- Can export both 2d and 3d patch masks · fc50f65b
  Christopher Randolph Rhodes authored 3 months ago
  
  fc50f65b
- Can export both 2d and 3d patch masks · 91c9e4e2
  Christopher Randolph Rhodes authored 3 months ago
  
  91c9e4e2
Dec 05, 2024
- Removed min_sobel, which was there for debugging · 5617a733
  Christopher Randolph Rhodes authored 3 months ago
  
  5617a733
- Fixed error with zero-length dataframe in 3d seg case · 555ac744
  Christopher Randolph Rhodes authored 3 months ago
  
  555ac744
Nov 29, 2024
- Tests pass, caught bug where a deserialized RoiSet would become 3d · 994f3e3e
  Christopher Randolph Rhodes authored 3 months ago
  
  994f3e3e
- No longer copy and pass around dataframes when running patch exports · 96a892c8
  Christopher Randolph Rhodes authored 3 months ago
  
  96a892c8
- Patch exports are passed to a single parameter now, but still working out bugs · dde6c75e
  Christopher Randolph Rhodes authored 3 months ago
  
  dde6c75e
Nov 27, 2024
- 3d RoiSet can be serialized/deserialized · be1fad5f
  Christopher Randolph Rhodes authored 3 months ago
  
  be1fad5f
- Label overlays on 3d exports are correct · 983b2bda
  Christopher Randolph Rhodes authored 3 months ago
  
  983b2bda
- Test confirms that 3d patches are written · ba11d516
  Christopher Randolph Rhodes authored 3 months ago
  
  ba11d516
- Slices are 3d · 3b72cb37
  Christopher Randolph Rhodes authored 3 months ago
  
  3b72cb37
- Patch masks become TIFs when they are 3d · eaa62b6f
  Christopher Randolph Rhodes authored 3 months ago
  
  eaa62b6f
- All pre-existing tests pass · 009e4b30
  Christopher Randolph Rhodes authored 3 months ago
  
  009e4b30