Commits · 18449743f9fa64f1987cbd42006711838966de6b · ALMF / SVLT · GitLab

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Aug 15, 2024
- Added option to remove all accessors · 18449743
  Christopher Randolph Rhodes authored 7 months ago
  
  18449743
- API maps RoiSet products as accessors · 3fa8292a
  Christopher Randolph Rhodes authored 7 months ago
  
  3fa8292a
- RoiSet can also return ordered dictionary of its export products as accessors · 0bf35725
  Christopher Randolph Rhodes authored 7 months ago
  
  0bf35725
- model can report its own name · 1042c544
  Christopher Randolph Rhodes authored 7 months ago
  
  1042c544
- server start script call configuration module that resolves routing dynamically · 148a0abe
  Christopher Randolph Rhodes authored 7 months ago
  
  148a0abe
- RoiSet workflows also use hierarchical routing · 00c4ad9b
  Christopher Randolph Rhodes authored 7 months ago
  
  00c4ad9b
- Implemented hierarchical routing · dce34bcf
  Christopher Randolph Rhodes authored 7 months ago
  
  dce34bcf
- Renamed ._unique to .unique · ddb55f55
  Christopher Randolph Rhodes authored 7 months ago
  
  ddb55f55
- cleaned up comments · f21ea5ea
  Christopher Randolph Rhodes authored 7 months ago
  
  f21ea5ea
- all roiset_obmap tests pass · 2526078a
  Christopher Randolph Rhodes authored 7 months ago
  
  2526078a
- workflow test passes with nontrivial RoiSet · 7aa5e80e
  Christopher Randolph Rhodes authored 7 months ago
  
  7aa5e80e
- Fixed bug where empty RoiSet throws error when calling classify_by · 8ed6d1fb
  Christopher Randolph Rhodes authored 7 months ago
  
  8ed6d1fb
- Added second segmentation pipeline with specific z-stack processing · 24019338
  Christopher Randolph Rhodes authored 7 months ago
  
  24019338
- Added mip convenience function · ce07f4c6
  Christopher Randolph Rhodes authored 7 months ago
  
  ce07f4c6
- Consolidated shared methods and classes in one module · 06a67847
  Christopher Randolph Rhodes authored 7 months ago
  
  06a67847
- Exception subclasses originate from pipeline util · 6c1cc9e0
  Christopher Randolph Rhodes authored 7 months ago
  
  6c1cc9e0
- Simplify pipeline call · 7a1351b3
  Christopher Randolph Rhodes authored 7 months ago
  
  7a1351b3
Aug 14, 2024
- Put simplest functional RoiSet pipeline model_server for now; derived channel... · 976206d7
  Christopher Randolph Rhodes authored 7 months ago
  
  Put simplest functional RoiSet pipeline model_server for now; derived channel and boundary seg alternatives in trec-adaptive-feedback
  976206d7
- Shortcut when initializing PipelineTrace · cba0f358
  Christopher Randolph Rhodes authored 7 months ago
  
  cba0f358
- Moved boundary pipeline calls to trec-adaptive-feedback from now · 71b0c14a
  Christopher Randolph Rhodes authored 7 months ago
  
  71b0c14a
- docstrings only · b589e3bd
  Christopher Randolph Rhodes authored 7 months ago
  
  b589e3bd
- Separated out derived channel functionality from main RoiSet class and tests · 6b416419
  Christopher Randolph Rhodes authored 7 months ago
  
  6b416419
Aug 13, 2024
- Test covers derived inputs pipeline method directly · c1cd28eb
  Christopher Randolph Rhodes authored 7 months ago
  
  c1cd28eb
- Consolidate some testing methods · 29c2818c
  Christopher Randolph Rhodes authored 7 months ago
  
  29c2818c
- Consolidated some recurring steps in API testing · 24ab120e
  Christopher Randolph Rhodes authored 7 months ago
  
  24ab120e
- Successful test calling RoiSet workflow over API · da0c7a35
  Christopher Randolph Rhodes authored 7 months ago
  
  da0c7a35
- write_accessor returns filename, not path · 00615c97
  Christopher Randolph Rhodes authored 7 months ago
  
  00615c97
- Expose method to get dataframe in a format that is JSON-serializable · 5d04888b
  Christopher Randolph Rhodes authored 7 months ago
  
  5d04888b
- Still wiring up API router.... · e6913080
  Christopher Randolph Rhodes authored 7 months ago
  
  e6913080
- Server starts; needed to remove old app routing from test class. Loading a... · 318d2dd2
  Christopher Randolph Rhodes authored 7 months ago
  
  Server starts; needed to remove old app routing from test class. Loading a real object classifier instead of dummy.
  318d2dd2
- Getting server errors · a9b82d0c
  Christopher Randolph Rhodes authored 7 months ago
  
  a9b82d0c
- First test passes on direct pipeline call with accessors · a295a72d
  Christopher Randolph Rhodes authored 7 months ago
  
  a295a72d
Aug 12, 2024
- Work in progress: translating RoiSet workflow from trec-adapative-feedback · 8ea865e8
  Christopher Randolph Rhodes authored 7 months ago
  
  8ea865e8
- Removed YOLOv8 wrappers; delint · 3a4cd280
  Christopher Randolph Rhodes authored 7 months ago
  
  3a4cd280
- Can read accessor from file with name in path itself · 58f2e40f
  Christopher Randolph Rhodes authored 7 months ago
  
  58f2e40f
- ilastik tests pass · d166583b
  Christopher Randolph Rhodes authored 7 months ago
  
  d166583b
- No longer assume that accessor_id and model_id are the defaults · 3cd3f600
  Christopher Randolph Rhodes authored 7 months ago
  
  3cd3f600
- Test passes on ilastik pipeline · 2ec75e0b
  Christopher Randolph Rhodes authored 7 months ago
  
  2ec75e0b
- Still adapting ilastik pipeline test · f9191561
  Christopher Randolph Rhodes authored 7 months ago
  
  f9191561
- Remove model_id and accessor_id from defaults · 7c6f2c08
  Christopher Randolph Rhodes authored 7 months ago
  
  7c6f2c08