Commits · 1aac54b4732e76908e167a720290d45be269d5f9 · ALMF / SVLT · GitLab

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Nov 10, 2024
- File-backed accessors no longer keep file handle open; lazy loading passes in principle · 1aac54b4
  Christopher Randolph Rhodes authored 4 months ago
  
  1aac54b4
- load method returns data array, init assigns it · a8fb9158
  Christopher Randolph Rhodes authored 4 months ago
  
  a8fb9158
- Merge branch 'dev_task_queue' into 'staging' · 18c0884c
  Christopher Randolph Rhodes authored 4 months ago
  
  Pipeline task management See merge request rhodes/model_server!72
  18c0884c
- Log task-related session events · d206d455
  Christopher Randolph Rhodes authored 4 months ago
  
  d206d455
- Cleaned up TODOs, tests pass · 260f9c3a
  Christopher Randolph Rhodes authored 4 months ago
  
  260f9c3a
- Added method to support queue-based tasks execution · 8863f3fa
  Christopher Randolph Rhodes authored 4 months ago
  
  8863f3fa
- Renamed task-management class since it is technically not a queue · 3776345f
  Christopher Randolph Rhodes authored 4 months ago
  
  3776345f
Nov 09, 2024
- Test covers failure originating in task execution · 69283c41
  Christopher Randolph Rhodes authored 4 months ago
  
  69283c41
- Test covers task API · 5c797626
  Christopher Randolph Rhodes authored 4 months ago
  
  5c797626
- Pass pop parameter when writing accessors · 1bbc9f07
  Christopher Randolph Rhodes authored 4 months ago
  
  1bbc9f07
- Option to schedule pipeline as a task · 82d4eaf7
  Christopher Randolph Rhodes authored 4 months ago
  
  82d4eaf7
- Tests pass using task queue · 794d976c
  Christopher Randolph Rhodes authored 4 months ago
  
  794d976c
- Tasks runs, just need to hook up result with pipeline test · 2a3f7bab
  Christopher Randolph Rhodes authored 4 months ago
  
  2a3f7bab
- Implemented queue, basic endpoints, and first pipeline example. Did not yet test execution. · ff6e182d
  Christopher Randolph Rhodes authored 4 months ago
  
  ff6e182d
Nov 04, 2024
- Merge branch 'release_2024.11.01' into 'staging' · 7342a878
  Christopher Randolph Rhodes authored 4 months ago
  
  Release 2024.11.01 See merge request rhodes/model_server!70
  7342a878
- Accidentally called channel picking twice · 9ee373d7
  Christopher Randolph Rhodes authored 4 months ago
  
  9ee373d7
Nov 02, 2024
- Merge branch 'int_trec' into 'staging' · 425a3ae3
  Christopher Randolph Rhodes authored 4 months ago
  
  Updates for TREC pipelines See merge request rhodes/model_server!68
  425a3ae3
- Removed aggregation method, instead can filter by other classification results · 1819a0f6
  Christopher Randolph Rhodes authored 4 months ago
  
  1819a0f6
- Int64 type was causing issues downstream in eval/query calls; Int16 is adequate · be6040f3
  Christopher Randolph Rhodes authored 4 months ago
  
  be6040f3
Nov 01, 2024
- IntensityThresholdInstanceMaskSegmentationModel enforces a mono image but... · ef72ee95
  Christopher Randolph Rhodes authored 4 months ago
  
  IntensityThresholdInstanceMaskSegmentationModel enforces a mono image but itself is not initiated with a channel
  ef72ee95
- Method to test whether accessor can be used as a mask · ee2d250e
  Christopher Randolph Rhodes authored 4 months ago
  
  ee2d250e
- Fixed handling of unset roi size filter · ce351a1b
  Christopher Randolph Rhodes authored 4 months ago
  
  ce351a1b
Oct 31, 2024
- Accidentally called channel picking twice · e679bb17
  Christopher Randolph Rhodes authored 4 months ago
  
  e679bb17
- Can filter ROI by minimum of height and width · a67869dc
  Christopher Randolph Rhodes authored 4 months ago
  
  a67869dc
- Can filter ROI by diagonal dimension, too · a76604bc
  Christopher Randolph Rhodes authored 4 months ago
  
  a76604bc
- Can also pass ndarray to PipelineTrace · e79f7a30
  Christopher Randolph Rhodes authored 4 months ago
  
  e79f7a30
- Option to pass probability threshold to label_pixel_class method; model falls... · 0e7adb66
  Christopher Randolph Rhodes authored 4 months ago
  
  Option to pass probability threshold to label_pixel_class method; model falls back on instance attribute if not supplied
  0e7adb66
- Skip first item when appending traces by default · 7266637c
  Christopher Randolph Rhodes authored 4 months ago
  
  7266637c
- Can append stacks for tracking pipelines · 423afe65
  Christopher Randolph Rhodes authored 4 months ago
  
  423afe65
- PatchStack no longer loses slice information when doing channel separation · a851ef4a
  Christopher Randolph Rhodes authored 4 months ago
  
  a851ef4a
- IlastikPixelClassifierModel can optionally rescale pxmap output to range of its input · b5d80b38
  Christopher Randolph Rhodes authored 4 months ago
  
  b5d80b38
- Simplified RoiSetWithDerivedChannels, now simply appends all derived channels... · 39c75c95
  Christopher Randolph Rhodes authored 4 months ago
  
  Simplified RoiSetWithDerivedChannels, now simply appends all derived channels in series. Test confirms that multichannel derived accessor is used.
  39c75c95
- Merge remote-tracking branch 'origin/int_trec' into int_trec · 35d12bfd
  Christopher Randolph Rhodes authored 4 months ago
  
  # Conflicts: # model_server/base/roiset.py
  35d12bfd
- Don't allow appending different data types · cdcfe3d3
  Christopher Randolph Rhodes authored 4 months ago
  
  cdcfe3d3
- Filter objects before generating their binary masks · 5df3f720
  Christopher Randolph Rhodes authored 4 months ago
  
  5df3f720
- Filter objects before generating their binary masks · 56848bba
  Christopher Randolph Rhodes authored 4 months ago
  
  56848bba
- Added option to crop list representation of patch stack · c038f5b1
  Christopher Randolph Rhodes authored 4 months ago
  
  c038f5b1
- Convenience property to find smallest and larges patches · 7c03ce46
  Christopher Randolph Rhodes authored 4 months ago
  
  7c03ce46
- Implement labels property for object classification models · 3a6fa831
  Christopher Randolph Rhodes authored 4 months ago
  
  3a6fa831
Oct 30, 2024
- Can create accessor that concatenates two channels · 18ace72f
  Christopher Randolph Rhodes authored 4 months ago
  
  18ace72f