Commits · 39334095556e245ff849b34b6473adc7adc62b14 · ALMF / SVLT · GitLab

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Sep 23, 2024
- Merge branch 'staging' into dev_obj_det · 39334095
  Christopher Randolph Rhodes authored 5 months ago
  
  39334095
- Removed roughed-in COCO models · ef341002
  Christopher Randolph Rhodes authored 5 months ago
  
  ef341002
- Repaired a few things that were causing ilastik test failures · 71ce1f57
  Christopher Randolph Rhodes authored 5 months ago
  
  71ce1f57
- Implemented and tested serialize/deserialize methods on object detection RoiSets · 29bbcf6f
  Christopher Randolph Rhodes authored 5 months ago
  
  29bbcf6f
- Merged DataFrame export logic to serialize method · a1d6d434
  Christopher Randolph Rhodes authored 5 months ago
  
  a1d6d434
- Call MIP method directly · 8a46a99a
  Christopher Randolph Rhodes authored 5 months ago
  
  8a46a99a
- Object detection RoiSet generator passes meaningful test · 546dbc1d
  Christopher Randolph Rhodes authored 5 months ago
  
  546dbc1d
- No errors but seg method comes up with fewer ROIs than bbox · a1b56785
  Christopher Randolph Rhodes authored 5 months ago
  
  a1b56785
Sep 20, 2024
- Working functionally but still need to verify that bounding box-generated... · 7ffe06a6
  Christopher Randolph Rhodes authored 6 months ago
  
  Working functionally but still need to verify that bounding box-generated RoiSet matches content of one with segmentation;
  7ffe06a6
- Can create RoiSet from bounding boxes; now working on patch-level accessors · caea291c
  Christopher Randolph Rhodes authored 6 months ago
  
  caea291c
- Parameterized deprojection when creating RoiSet from binary mask, including... · 3730f8c7
  Christopher Randolph Rhodes authored 6 months ago
  
  Parameterized deprojection when creating RoiSet from binary mask, including option to pass a channel
  3730f8c7
- Added and tested method to get focus (z) axis in accessor · 697b383d
  Christopher Randolph Rhodes authored 6 months ago
  
  697b383d
- Added and tested accessor method to run argmax on z-axis · 5ccb314a
  Christopher Randolph Rhodes authored 6 months ago
  
  5ccb314a
- Roughed in more bounding box generator · 780e0178
  Christopher Randolph Rhodes authored 6 months ago
  
  780e0178
- Preparing to make binary mask optional in case of object detection result · 97d6b156
  Christopher Randolph Rhodes authored 6 months ago
  
  97d6b156
Sep 13, 2024
- Still implementing generation of RoiSet from bounding boxes alone · 8f33b530
  Christopher Randolph Rhodes authored 6 months ago
  
  8f33b530
- Merged in changes with accessor convenience methods · e3e80e05
  Christopher Randolph Rhodes authored 6 months ago
  
  e3e80e05
- Inserted valid type hint · b8382eca
  Christopher Randolph Rhodes authored 6 months ago
  
  b8382eca
- Classification transfer returns overlap dataframe for debugging purposes · 1d5d3c94
  Christopher Randolph Rhodes authored 6 months ago
  
  1d5d3c94
- Object classification transfer is functional · 53ef598a
  Christopher Randolph Rhodes authored 6 months ago
  
  53ef598a
Sep 12, 2024
- Still implementing instance classification label transfer · ffc5f25e
  Christopher Randolph Rhodes authored 6 months ago
  
  ffc5f25e
- Added and tested methods to manipulation classification result columns · 902b55d5
  Christopher Randolph Rhodes authored 6 months ago
  
  902b55d5
- Merged in smoothing operation that supports binary masks · a4371edc
  Christopher Randolph Rhodes authored 6 months ago
  
  a4371edc
- Prototyping test of label transfer · 653252ba
  Christopher Randolph Rhodes authored 6 months ago
  
  653252ba
- Tested segmentation from two dataframes · 940b7941
  Christopher Randolph Rhodes authored 6 months ago
  
  940b7941
- Implemented segmentation IOU · 19261090
  Christopher Randolph Rhodes authored 6 months ago
  
  19261090
- Implemented bounding box intersection metric · 88cd7cae
  Christopher Randolph Rhodes authored 6 months ago
  
  88cd7cae
Sep 06, 2024
- Successful test of multi-set bbox overlap · f7037423
  Christopher Randolph Rhodes authored 6 months ago
  
  f7037423
Sep 03, 2024
- Roughed in optional to compare overlaps between two DataFrames, pathway to... · e8a8428b
  Christopher Randolph Rhodes authored 6 months ago
  
  Roughed in optional to compare overlaps between two DataFrames, pathway to transferring classification labels
  e8a8428b
Aug 02, 2024
- Overlap tests pass; getting pandas warning · b51fec7e
  Christopher Randolph Rhodes authored 7 months ago
  
  b51fec7e
- filter_df_overlap_bbox now includes both sides of an overlapping Roi pair as separate rows · 1de55e7c
  Christopher Randolph Rhodes authored 7 months ago
  
  1de55e7c
- filter_df_overlap_bbox does not include "second" ROI in index so can be incomplete · 1de38621
  Christopher Randolph Rhodes authored 7 months ago
  
  1de38621
Aug 01, 2024
- Implemented and tested creation of RoiSet from polygon coordinates · 799f2ea5
  Christopher Randolph Rhodes authored 7 months ago
  
  799f2ea5
- Docstring and assertion in polymer fit · c6656826
  Christopher Randolph Rhodes authored 7 months ago
  
  c6656826
- Removed additional cases where accessor data was sliced directly · c87d3bb1
  Christopher Randolph Rhodes authored 7 months ago
  
  c87d3bb1
- Test cover use .data_xy and .data_xyz properties · 75dca594
  Christopher Randolph Rhodes authored 7 months ago
  
  75dca594
- Added convenience property to get XYZ ndarray on mono arrays · d29a9d6b
  Christopher Randolph Rhodes authored 7 months ago
  
  d29a9d6b
- Added convenience property to get XY ndarray on flattened, mono arrays · 22478a7d
  Christopher Randolph Rhodes authored 7 months ago
  
  22478a7d
Jul 31, 2024
- Implemented polygon fitting · 531fac85
  Christopher Randolph Rhodes authored 7 months ago
  
  531fac85
Jul 26, 2024
- Merge branch 'build-2024.07.26' into 'staging' · fcebeee8
  Christopher Randolph Rhodes authored 7 months ago
  
  Test build today See merge request rhodes/model_server!56
  fcebeee8