Commits · 40be402fb4d097432a30d760d0fd709dccc91c12 · ALMF / SVLT · GitLab

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Nov 02, 2023
- Added 3D patch accessor · 40be402f
  Christopher Randolph Rhodes authored 1 year ago
  
  40be402f
- Added method to cast patch as YXCZ array · 25ed7955
  Christopher Randolph Rhodes authored 1 year ago
  
  25ed7955
Oct 30, 2023
- Overloaded mask_largest_object to include both object maps and binary masks as inputs · 6cf4f1c0
  Christopher Randolph Rhodes authored 1 year ago
  
  6cf4f1c0
- Separate method to mask out all but largest object · c02b572a
  Christopher Randolph Rhodes authored 1 year ago
  
  c02b572a
- Made filepath an explicit property · 72b15b18
  Christopher Randolph Rhodes authored 1 year ago
  
  72b15b18
- MonoPatchStackFromFile now contains file accessor as an object · 68b683fc
  Christopher Randolph Rhodes authored 1 year ago
  
  68b683fc
Oct 26, 2023
- Use patch stack accessor in a batch script · 6debd9c3
  Christopher Randolph Rhodes authored 1 year ago
  
  6debd9c3
- Split out patch/patch mask creation for file export; implemented and test... · 4d16baa5
  Christopher Randolph Rhodes authored 1 year ago
  
  Split out patch/patch mask creation for file export; implemented and test accessor abstraction for patch arrays
  4d16baa5
Oct 20, 2023
- Test that zmask can also be single z-slice · 672218ca
  Christopher Randolph Rhodes authored 1 year ago
  
  672218ca
Oct 12, 2023
- Corrected translational error in mask file output · a2c2fa51
  Christopher Randolph Rhodes authored 1 year ago
  
  a2c2fa51
Oct 10, 2023
- Chasing down bug in overlay annotations · aade8740
  Christopher Randolph Rhodes authored 1 year ago
  
  aade8740
- Implemented and tested rendering of contours and mask overlays · 00672758
  Christopher Randolph Rhodes authored 1 year ago
  
  00672758
- Support balanced multichannel overlay as RGB export · dc7d49bb
  Christopher Randolph Rhodes authored 1 year ago
  
  dc7d49bb
- Now test against multichannel TIF that includes chlorophyl · 6364418b
  Christopher Randolph Rhodes authored 1 year ago
  
  6364418b
Oct 05, 2023
- Finished implementing point-based projection · 8a5486aa
  Christopher Randolph Rhodes authored 1 year ago
  
  8a5486aa
- Corrected upper clipping range in focus-adaptive projection · 0c660d2b
  Christopher Randolph Rhodes authored 1 year ago
  
  0c660d2b
- Generalized to flattening multichannel images · 9bce8268
  Christopher Randolph Rhodes authored 1 year ago
  
  9bce8268
- Tested operation to flatten image based on focal points from body mask · 1092b9c5
  Christopher Randolph Rhodes authored 1 year ago
  
  1092b9c5
- Keep all objects in dataframe and apply filter only inside zmask object loop · 672ec3d3
  Christopher Randolph Rhodes authored 1 year ago
  
  672ec3d3
Sep 29, 2023
- Pass and export object dataframes, as well as timer results · 6f064829
  Christopher Randolph Rhodes authored 1 year ago
  
  6f064829
- Removed success flag, which was non-informative and causing problems when no... · faae666d
  Christopher Randolph Rhodes authored 1 year ago
  
  Removed success flag, which was non-informative and causing problems when no boxes were sent for export
  faae666d
- Cleaned up patch export functino · cdc3ea35
  Christopher Randolph Rhodes authored 1 year ago
  
  cdc3ea35
- Roughed in remaining chaeo project modules · 5515df64
  Christopher Randolph Rhodes authored 1 year ago
  
  5515df64
- Consolidated 2d and 3d patch exporting; tests pass · 5243e3cf
  Christopher Randolph Rhodes authored 1 year ago
  
  5243e3cf