Commits · 531d37b91628a79f3f4c34ece51bfb88b699aef3 · ALMF / SVLT · GitLab

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Jul 08, 2024
- Roughed in Yolo class incl. training method · 531d37b9
  Christopher Randolph Rhodes authored 8 months ago
  
  531d37b9
Jun 06, 2024
- Started looping over stack's z-levels to implement COCO-compliant data export · f18af398
  Christopher Randolph Rhodes authored 9 months ago
  
  f18af398
Jun 03, 2024
- Merge branch 'dev_composable_accessors' into 'staging' · 42639002
  Christopher Randolph Rhodes authored 9 months ago
  
  Accessor apply() method See merge request rhodes/model_server!49
  42639002
- _derived_accessor() method now sets class of accessor that apply() returns · 42c609f7
  Christopher Randolph Rhodes authored 9 months ago
  
  42c609f7
- _derived_accessor() method now sets class of accessor that apply() returns · e67d2ae4
  Christopher Randolph Rhodes authored 9 months ago
  
  e67d2ae4
- Added and tested apply function to support pipeline-line operations · 55af627b
  Christopher Randolph Rhodes authored 9 months ago
  
  55af627b
- Renamed get_one_channel_data to get_mono · 03786d14
  Christopher Randolph Rhodes authored 9 months ago
  
  03786d14
- Merge branch 'issue0032' into 'staging' · 4918c8c4
  Christopher Randolph Rhodes authored 9 months ago
  
  Issue0032 See merge request rhodes/model_server!48
  4918c8c4
- Test covers multiple raw and multiple derived channels · ae458c2a
  Christopher Randolph Rhodes authored 9 months ago
  
  ae458c2a
- Trying to complete meaningful test with both raw and derived channels · 6a1d1e40
  Christopher Randolph Rhodes authored 9 months ago
  
  6a1d1e40
- RoiSet can now return and export two-channel images as both TIFs and PNGs · 655fbb62
  Christopher Randolph Rhodes authored 9 months ago
  
  655fbb62
- PNG export can handle two-channel data without error, appending blank blue channel · 16875cd2
  Christopher Randolph Rhodes authored 9 months ago
  
  16875cd2
- Can handle and export arbitrary multi-channel patches · 952379b5
  Christopher Randolph Rhodes authored 9 months ago
  
  952379b5
- Merge branch 'issue_multiple_labels' into 'staging' · 3c80db68
  Christopher Randolph Rhodes authored 9 months ago
  
  Can now construct RoiSets with no ROIs See merge request rhodes/model_server!47
  3c80db68
- Fixed underlying error when constructing RoiSets with no objects · 9c0dbc62
  Christopher Randolph Rhodes authored 9 months ago
  
  9c0dbc62
- Test covers issue creating an RoiSet with no ROI objects · af81c3bb
  Christopher Randolph Rhodes authored 9 months ago
  
  af81c3bb
- Removed test for handling multiple object labels in a patch, now that... · 1e4090f3
  Christopher Randolph Rhodes authored 9 months ago
  
  Removed test for handling multiple object labels in a patch, now that underlying cause of this problem has been fixed
  1e4090f3
May 22, 2024
- Merge branch 'issue0038' into 'staging' · 74961b83
  Christopher Randolph Rhodes authored 10 months ago
  
  Issue0038 See merge request rhodes/model_server!46
  74961b83
- Drop none-valued query parameters by default · 39e79145
  Christopher Randolph Rhodes authored 10 months ago
  
  39e79145
- Drop none-valued query parameters by default · f7a78116
  Christopher Randolph Rhodes authored 10 months ago
  
  f7a78116
- Merge branch 'staging' into issue0038 · 83772a26
  Christopher Randolph Rhodes authored 10 months ago
  
  83772a26
- Merge branch 'issue0037' into 'staging' · e4dcfbfb
  Christopher Randolph Rhodes authored 10 months ago
  
  Issue0037 See merge request rhodes/model_server!45
  e4dcfbfb
- ilastik model loading now takes duplicate in request body · 1ab12cb8
  Christopher Randolph Rhodes authored 10 months ago
  
  1ab12cb8
- Merge branch 'staging' into issue0037 · 621bb0cf
  Christopher Randolph Rhodes authored 10 months ago
  
  621bb0cf
- Pass model-associated request data in body, not query · b2056522
  Christopher Randolph Rhodes authored 10 months ago
  
  b2056522
- Pass model-associated request data in body, not query · e310149a
  Christopher Randolph Rhodes authored 10 months ago
  
  e310149a
May 08, 2024
- Merge branch 'dev_connectivity_patch_obmaps' into 'staging' · d2287ee5
  Christopher Randolph Rhodes authored 10 months ago
  
  Connectivity of labeling See merge request rhodes/model_server!44
  d2287ee5
- Specify connectivity of labeling · e2d864b6
  Christopher Randolph Rhodes authored 10 months ago
  
  e2d864b6
- Added object method to write to and class method to read from file · 18b5d68c
  Christopher Randolph Rhodes authored 10 months ago
  
  18b5d68c
May 07, 2024
- Merge branch 'dev_allow_unpadded_patches' into 'staging' · 87d32037
  Christopher Randolph Rhodes authored 10 months ago
  
  Allow None to certain int parameters See merge request rhodes/model_server!43
  87d32037
- Allow None to certain int parameters · 4b8721ca
  Christopher Randolph Rhodes authored 10 months ago
  
  4b8721ca
May 06, 2024
- Merge branch 'dev_ilastik_params_upon_loading' into 'staging' · 8bcb0046
  Christopher Randolph Rhodes authored 10 months ago
  
  Models are now initialized with pydantic models See merge request rhodes/model_server!42
  8bcb0046
- Expose gaussian blur in ilastik segmentation model · cb77c5f9
  Christopher Randolph Rhodes authored 10 months ago
  
  cb77c5f9
- Models now generically use Pydyantic models for parameterization · 097a6ca2
  Christopher Randolph Rhodes authored 10 months ago
  
  097a6ca2
- ilastik load endpoints now use Pydyantic models · fff8a36f
  Christopher Randolph Rhodes authored 10 months ago
  
  fff8a36f
- Moved project file into model.params; removed autogeneration of segmentation... · 986066a0
  Christopher Randolph Rhodes authored 10 months ago
  
  Moved project file into model.params; removed autogeneration of segmentation model from pixel predictions model
  986066a0
May 03, 2024
- Merge branch 'dev_watershed_centroids' into 'staging' · 93d843b5
  Christopher Randolph Rhodes authored 10 months ago
  
  Added static constructor for making RoiSets from segmentation masks See merge request rhodes/model_server!41
  93d843b5
- Added static constructor for making RoiSets from segmentation masks · 426b5b79
  Christopher Randolph Rhodes authored 10 months ago
  
  426b5b79
Apr 26, 2024
- Merge branch 'dev_multichannel_ilastik' into 'staging' · cf492a3e
  Christopher Randolph Rhodes authored 11 months ago
  
  ilastik workflow and API allow multichannel inputs See merge request rhodes/model_server!40
  cf492a3e
- Removed in-progress RoiSet test · 2310314b
  Christopher Randolph Rhodes authored 11 months ago
  
  2310314b