Commits · 58f2e40f1ff2b520ce7491d9c45f3902c52f1d5a · ALMF / SVLT · GitLab

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Aug 12, 2024
- Can read accessor from file with name in path itself · 58f2e40f
  Christopher Randolph Rhodes authored 7 months ago
  
  58f2e40f
- Parameters auto-validates anything ending in accessor_id and model_id;... · 6735a2f7
  Christopher Randolph Rhodes authored 7 months ago
  
  Parameters auto-validates anything ending in accessor_id and model_id; call_pipeline() maps these to objects and sends to pipeline function as dicts of respective objects
  6735a2f7
Aug 09, 2024
- Intermediate data can now be kept in session context · b0b8499d
  Christopher Randolph Rhodes authored 7 months ago
  
  b0b8499d
- Moving as much of pipeline code as possible to reusable functions · 5b5d39b9
  Christopher Randolph Rhodes authored 7 months ago
  
  5b5d39b9
- Test covers accessor output from segmentation pipeline · edf40efa
  Christopher Randolph Rhodes authored 7 months ago
  
  edf40efa
- Test covers accessor output · 10beaebd
  Christopher Randolph Rhodes authored 7 months ago
  
  10beaebd
- Register output accessor to session, not yet exported · 5824cb5b
  Christopher Randolph Rhodes authored 7 months ago
  
  5824cb5b
- Added session method to get accessor object with and without popping · d02ee357
  Christopher Randolph Rhodes authored 7 months ago
  
  d02ee357
- Added and tested exception handling for unlisted accessor ID · 9c735683
  Christopher Randolph Rhodes authored 7 months ago
  
  9c735683
- Implemented list/get/add/delete accessors · b33a5047
  Christopher Randolph Rhodes authored 7 months ago
  
  b33a5047
Aug 08, 2024
- Close to implementing accessor add/delete/list to API · eb1f2d68
  Christopher Randolph Rhodes authored 7 months ago
  
  eb1f2d68
- Session can add and delete accessors to its scope · e9da5e6a
  Christopher Randolph Rhodes authored 7 months ago
  
  e9da5e6a
- Implemented and tested method to write intermediate pipeline products to file · 2464806c
  Christopher Randolph Rhodes authored 7 months ago
  
  2464806c
- Segmentation pipeline works, module is annotated · a197934e
  Christopher Randolph Rhodes authored 7 months ago
  
  a197934e
- Pixel classification pipeline is tested with smoothing parameter · 2f644dfc
  Christopher Randolph Rhodes authored 7 months ago
  
  2f644dfc
- Revised smoothing function to work with binary masks; tested accordingly · 2a8db3e2
  Christopher Randolph Rhodes authored 7 months ago
  
  2a8db3e2
Aug 05, 2024
- Implemented simple but usable segmentation model · 5c940e41
  Christopher Randolph Rhodes authored 7 months ago
  
  5c940e41
- Last commit misplaced ilastik tests; these now all pass · cf493168
  Christopher Randolph Rhodes authored 7 months ago
  
  cf493168
- All tests pass · 943129fa
  Christopher Randolph Rhodes authored 7 months ago
  
  943129fa
- Confirmed test server starts up with additional test-specific endpoints · a117babb
  Christopher Randolph Rhodes authored 7 months ago
  
  a117babb
- In the middle of restoring dummy tests, now declared within testing modules themselves · 1696fbee
  Christopher Randolph Rhodes authored 7 months ago
  
  1696fbee
- Still some references to dummy models in testing · 7d2a817a
  Christopher Randolph Rhodes authored 7 months ago
  
  7d2a817a
- Corrected some API tests · 56d98eae
  Christopher Randolph Rhodes authored 7 months ago
  
  56d98eae
- Removed many dummy tests; but still hitting errors in test_api · 5bc75c0c
  Christopher Randolph Rhodes authored 7 months ago
  
  5bc75c0c
- Removed testing of dummy endpoints completely · 5d4edf40
  Christopher Randolph Rhodes authored 7 months ago
  
  5d4edf40
Aug 02, 2024
- Overlap tests pass; getting pandas warning · b51fec7e
  Christopher Randolph Rhodes authored 7 months ago
  
  b51fec7e
- filter_df_overlap_bbox now includes both sides of an overlapping Roi pair as separate rows · 1de55e7c
  Christopher Randolph Rhodes authored 7 months ago
  
  1de55e7c
- filter_df_overlap_bbox does not include "second" ROI in index so can be incomplete · 1de38621
  Christopher Randolph Rhodes authored 7 months ago
  
  1de38621
Aug 01, 2024
- Implemented and tested creation of RoiSet from polygon coordinates · 799f2ea5
  Christopher Randolph Rhodes authored 7 months ago
  
  799f2ea5
- Docstring and assertion in polymer fit · c6656826
  Christopher Randolph Rhodes authored 7 months ago
  
  c6656826
- Removed additional cases where accessor data was sliced directly · c87d3bb1
  Christopher Randolph Rhodes authored 7 months ago
  
  c87d3bb1
Jul 31, 2024
- Implemented polygon fitting · 531fac85
  Christopher Randolph Rhodes authored 8 months ago
  
  531fac85
Jul 17, 2024
- Object classification and object map creation are now separate functions; no... · 6f12d7e9
  Christopher Randolph Rhodes authored 8 months ago
  
  Object classification and object map creation are now separate functions; no longer persist object maps.
  6f12d7e9
- Changed names of static methods · 03e748c1
  Christopher Randolph Rhodes authored 8 months ago
  
  03e748c1
- Accidentally not taking mask MIP · 51339418
  Christopher Randolph Rhodes authored 8 months ago
  
  51339418
Jul 16, 2024
- Added Accessor method to handle YX cropping · 3ab56713
  Christopher Randolph Rhodes authored 8 months ago
  
  3ab56713
- Generally removing necessity of instantiating with a map of object IDs · 8ecc14be
  Christopher Randolph Rhodes authored 8 months ago
  
  8ecc14be
- Renamed dataframe maker and moved derivative dataframe columns into separate method · b4693d69
  Christopher Randolph Rhodes authored 8 months ago
  
  b4693d69
- Removed image-flattening from focal points · 3bf6161c
  Christopher Randolph Rhodes authored 8 months ago
  
  3bf6161c
Jul 15, 2024
- Implemented logic to find overlapping bounding boxes · 83259e77
  Christopher Randolph Rhodes authored 8 months ago
  
  83259e77