Commits · 5ba5f929c652d0f7ccf7d5723c7a200a5627b77f · ALMF / SVLT · GitLab

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Nov 11, 2024
- Implemented batch runner client, can lazy load accessors, still much to do · 5ba5f929
  Christopher Randolph Rhodes authored 4 months ago
  
  5ba5f929
- Don't load accessor just to report its info · b28389d3
  Christopher Randolph Rhodes authored 4 months ago
  
  b28389d3
- Added option to parse method from JSON-like dict · 63537037
  Christopher Randolph Rhodes authored 4 months ago
  
  63537037
- Added TODO · dd914cd6
  Christopher Randolph Rhodes authored 4 months ago
  
  dd914cd6
- Pass lazy loading option from API · d1fefcc5
  Christopher Randolph Rhodes authored 4 months ago
  
  d1fefcc5
- Removed commented code · 1fec67fb
  Christopher Randolph Rhodes authored 4 months ago
  
  1fec67fb
- Local client; test client now uses this, too · f3901d8a
  Christopher Randolph Rhodes authored 4 months ago
  
  f3901d8a
- Started modifying batch runner utility for serverside task processing; require... · af82f6ee
  Christopher Randolph Rhodes authored 4 months ago
  
  Started modifying batch runner utility for serverside task processing; require implementation of non-test client
  af82f6ee
Nov 10, 2024
- Added and tested endpoint to run all unfinished tasks · d4abdc40
  Christopher Randolph Rhodes authored 4 months ago
  
  d4abdc40
- Finished test deletion of accessors associated with a pipeline task_id · 1cb2c3ae
  Christopher Randolph Rhodes authored 4 months ago
  
  1cb2c3ae
- Removed notion on unloading data from accessor · e4e4e23e
  Christopher Randolph Rhodes authored 4 months ago
  
  e4e4e23e
- Added unload method · 08628f0c
  Christopher Randolph Rhodes authored 4 months ago
  
  08628f0c
- Lazy loading remains only a feature of GenericImageFileAccessor; not applied to PatchStack · d27c80bc
  Christopher Randolph Rhodes authored 4 months ago
  
  d27c80bc
- Completed lazy loading implementation at acccesor level · e78c0358
  Christopher Randolph Rhodes authored 4 months ago
  
  e78c0358
- File-backed accessors no longer keep file handle open; lazy loading passes in principle · 1aac54b4
  Christopher Randolph Rhodes authored 4 months ago
  
  1aac54b4
- load method returns data array, init assigns it · a8fb9158
  Christopher Randolph Rhodes authored 4 months ago
  
  a8fb9158
- Log task-related session events · d206d455
  Christopher Randolph Rhodes authored 4 months ago
  
  d206d455
- Cleaned up TODOs, tests pass · 260f9c3a
  Christopher Randolph Rhodes authored 4 months ago
  
  260f9c3a
- Added method to support queue-based tasks execution · 8863f3fa
  Christopher Randolph Rhodes authored 4 months ago
  
  8863f3fa
- Renamed task-management class since it is technically not a queue · 3776345f
  Christopher Randolph Rhodes authored 4 months ago
  
  3776345f
Nov 09, 2024
- Test covers failure originating in task execution · 69283c41
  Christopher Randolph Rhodes authored 4 months ago
  
  69283c41
- Test covers task API · 5c797626
  Christopher Randolph Rhodes authored 4 months ago
  
  5c797626
- Pass pop parameter when writing accessors · 1bbc9f07
  Christopher Randolph Rhodes authored 4 months ago
  
  1bbc9f07
- Option to schedule pipeline as a task · 82d4eaf7
  Christopher Randolph Rhodes authored 4 months ago
  
  82d4eaf7
- Tests pass using task queue · 794d976c
  Christopher Randolph Rhodes authored 4 months ago
  
  794d976c
- Tasks runs, just need to hook up result with pipeline test · 2a3f7bab
  Christopher Randolph Rhodes authored 4 months ago
  
  2a3f7bab
- Implemented queue, basic endpoints, and first pipeline example. Did not yet test execution. · ff6e182d
  Christopher Randolph Rhodes authored 4 months ago
  
  ff6e182d
Nov 02, 2024
- Removed aggregation method, instead can filter by other classification results · 1819a0f6
  Christopher Randolph Rhodes authored 4 months ago
  
  1819a0f6
- Int64 type was causing issues downstream in eval/query calls; Int16 is adequate · be6040f3
  Christopher Randolph Rhodes authored 4 months ago
  
  be6040f3
Nov 01, 2024
- IntensityThresholdInstanceMaskSegmentationModel enforces a mono image but... · ef72ee95
  Christopher Randolph Rhodes authored 4 months ago
  
  IntensityThresholdInstanceMaskSegmentationModel enforces a mono image but itself is not initiated with a channel
  ef72ee95
- Method to test whether accessor can be used as a mask · ee2d250e
  Christopher Randolph Rhodes authored 4 months ago
  
  ee2d250e
- Fixed handling of unset roi size filter · ce351a1b
  Christopher Randolph Rhodes authored 4 months ago
  
  ce351a1b
Oct 31, 2024
- Accidentally called channel picking twice · e679bb17
  Christopher Randolph Rhodes authored 4 months ago
  
  e679bb17
- Can filter ROI by minimum of height and width · a67869dc
  Christopher Randolph Rhodes authored 4 months ago
  
  a67869dc
- Can filter ROI by diagonal dimension, too · a76604bc
  Christopher Randolph Rhodes authored 4 months ago
  
  a76604bc
- Can also pass ndarray to PipelineTrace · e79f7a30
  Christopher Randolph Rhodes authored 4 months ago
  
  e79f7a30
- Option to pass probability threshold to label_pixel_class method; model falls... · 0e7adb66
  Christopher Randolph Rhodes authored 4 months ago
  
  Option to pass probability threshold to label_pixel_class method; model falls back on instance attribute if not supplied
  0e7adb66
- Skip first item when appending traces by default · 7266637c
  Christopher Randolph Rhodes authored 4 months ago
  
  7266637c
- Can append stacks for tracking pipelines · 423afe65
  Christopher Randolph Rhodes authored 4 months ago
  
  423afe65
- PatchStack no longer loses slice information when doing channel separation · a851ef4a
  Christopher Randolph Rhodes authored 4 months ago
  
  a851ef4a