Commits · 5bb914c7bf3446745f06a681fc592c30b7b01c66 · ALMF / SVLT · GitLab

Snippets Groups Projects

Nov 21, 2024
- Optional intensity threshold for weight deprojection · 5bb914c7
  Christopher Randolph Rhodes authored 4 months ago
  
  5bb914c7
- Adjusted threshold so that test passes, this must have changed with alternate deprojection · ea5147c2
  Christopher Randolph Rhodes authored 4 months ago
  
  ea5147c2
- Progress exporting RoiSet products but deleting accessors accidentally takes out the wrong thing · 6c734bf1
  Christopher Randolph Rhodes authored 4 months ago
  
  6c734bf1
- Pass prefix information to RoiSet product exports · 05029af1
  Christopher Randolph Rhodes authored 4 months ago
  
  05029af1
- Corrected arithmetic error in deprojection, but this is triggering exceptions with patch dimensions · a87c8a4a
  Christopher Randolph Rhodes authored 4 months ago
  
  a87c8a4a
- Pass prefix to overlays map · ad4f1d5e
  Christopher Randolph Rhodes authored 4 months ago
  
  ad4f1d5e
- Deleting all accessors doesn't delete those that are still registered as... · 5869e2a4
  Christopher Randolph Rhodes authored 4 months ago
  
  Deleting all accessors doesn't delete those that are still registered as dependencies in unfinished tasks
  5869e2a4
- Updated API tests to reflect addition of "READY" task status · 55ac4ba1
  Christopher Randolph Rhodes authored 4 months ago
  
  55ac4ba1
- Instance method to name accessor IDs that a given task depends on · e1ce2a52
  Christopher Randolph Rhodes authored 4 months ago
  
  e1ce2a52
- Hooked up overlay map to export runner · d63f13ef
  Christopher Randolph Rhodes authored 4 months ago
  
  d63f13ef
- .to_8bit was causing problems when applied to an accessor that was already 8-bt · e8461666
  Christopher Randolph Rhodes authored 4 months ago
  
  e8461666
- Removed leftover assertion from test development · f42aa007
  Christopher Randolph Rhodes authored 4 months ago
  
  f42aa007
- Added reader class method to PatchStack, used in test · e6c03996
  Christopher Randolph Rhodes authored 4 months ago
  
  e6c03996
Nov 20, 2024
- Can export patch stacks as single files · 14d4ccf0
  Christopher Randolph Rhodes authored 4 months ago
  
  14d4ccf0
- Shortcut method to convert an accessor to 8-bit · 2ab16d52
  Christopher Randolph Rhodes authored 4 months ago
  
  2ab16d52
- Option to MIP label identities overlay map · 42bbc0e3
  Christopher Randolph Rhodes authored 4 months ago
  
  42bbc0e3
- Can optionally write composite TIF · 96e05428
  Christopher Randolph Rhodes authored 4 months ago
  
  96e05428
- Composite export works, addressed previous problem which was actually clipping related · 6977dc90
  Christopher Randolph Rhodes authored 4 months ago
  
  6977dc90
- Working example of RGB composite export but it shows overlapping objects · 028a3004
  Christopher Randolph Rhodes authored 4 months ago
  
  028a3004
- Overlay map exports as multichannel z-stack · d21eb159
  Christopher Randolph Rhodes authored 4 months ago
  
  d21eb159
- Incomplete implementation of overlay object identities map using glasbey palette · aabdc7c5
  Christopher Randolph Rhodes authored 4 months ago
  
  aabdc7c5
- Incomplete implementation of overlay object identities map using glasbey palette · feafaadd
  Christopher Randolph Rhodes authored 4 months ago
  
  feafaadd
- Intensity-weighted deprojection passes tests · 5cda275a
  Christopher Randolph Rhodes authored 4 months ago
  
  5cda275a
- Drafted intensity-weighted deprojection · 39460082
  Christopher Randolph Rhodes authored 4 months ago
  
  39460082
- .apply method casts result to same dtype as input accessor by default · 6566923a
  Christopher Randolph Rhodes authored 4 months ago
  
  6566923a
Nov 19, 2024
- Call writer that automatically creates directory · 6f614d5d
  Christopher Randolph Rhodes authored 4 months ago
  
  6f614d5d
- Stopped catching run task errors for now, this made debugging way too hard · 1a6068f2
  Christopher Randolph Rhodes authored 4 months ago
  
  1a6068f2
- Simplified input-output accessor mapping · 05ec1940
  Christopher Randolph Rhodes authored 4 months ago
  
  05ec1940
- Working on correcting routing of accessor IDs · a2a204e3
  Christopher Randolph Rhodes authored 4 months ago
  
  a2a204e3
- Pipelines output more descriptive filenames with optional subdirectories · 31aef432
  Christopher Randolph Rhodes authored 4 months ago
  
  31aef432
- Batch runner names files with key that is relatable back to input stack, as well as task key · 5076c77e
  Christopher Randolph Rhodes authored 4 months ago
  
  5076c77e
- session should report next "ready" task, not "waiting" · 0ba3d2ae
  Christopher Randolph Rhodes authored 4 months ago
  
  0ba3d2ae
- Moved test location · 0a88ec28
  Christopher Randolph Rhodes authored 4 months ago
  
  0a88ec28
- Test of dependency checking passes · 1888e22e
  Christopher Randolph Rhodes authored 4 months ago
  
  1888e22e
- Pipeline runs without error, non-informative file names at end · 6fe0574b
  Christopher Randolph Rhodes authored 4 months ago
  
  6fe0574b
- Cast smooth result back to native dtype · 0e04fcab
  Christopher Randolph Rhodes authored 4 months ago
  
  0e04fcab
- Discrepancy in queueing task with params pydantic object or dict · ca75a8d1
  Christopher Randolph Rhodes authored 4 months ago
  
  ca75a8d1
Nov 18, 2024
- Match output accessors with already queued task IDs · c85d71ac
  Christopher Randolph Rhodes authored 4 months ago
  
  c85d71ac
- Expose method to lookup output accessor id by task id · 1775333f
  Christopher Randolph Rhodes authored 4 months ago
  
  1775333f
- No longer pop by default, tests reflect this · ffd342ac
  Christopher Randolph Rhodes authored 4 months ago
  
  ffd342ac