Commits · 7b8cb7943d98a519cbd5bce05c0b8e65f71366bd · ALMF / SVLT · GitLab

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Feb 06, 2025
- Segment on ch 2, validate on ch 1 · 7b8cb794
  Christopher Randolph Rhodes authored 1 month ago
  
  7b8cb794
- Use DataFrame iterator for feature extraction · f86e488c
  Christopher Randolph Rhodes authored 1 month ago
  
  f86e488c
- RoiSet knows index of each patch in PatchStacks · 77659d95
  Christopher Randolph Rhodes authored 1 month ago
  
  77659d95
- Passes on 2d · 878404c0
  Christopher Randolph Rhodes authored 1 month ago
  
  878404c0
- Iterating on patch stacks, not on object identities image · fc55cb21
  Christopher Randolph Rhodes authored 1 month ago
  
  fc55cb21
- Added label-encoded patch masks · 1cbabad8
  Christopher Randolph Rhodes authored 1 month ago
  
  1cbabad8
- Functional prototype of regionsprops features · e97808b6
  Christopher Randolph Rhodes authored 1 month ago
  
  e97808b6
- Added utility function for moving channel to last position in ndarray · 685a5807
  Christopher Randolph Rhodes authored 1 month ago
  
  685a5807
- Remapped ROI pipelines · cf9799a4
  Christopher Randolph Rhodes authored 1 month ago
  
  cf9799a4
- Organizing tests accordingly, still some-cross references from base package to subpackages · 7918055e
  Christopher Randolph Rhodes authored 1 month ago
  
  7918055e
- RoiSet-related things go into a subpackage · 74aca3ed
  Christopher Randolph Rhodes authored 1 month ago
  
  74aca3ed
- Reorganizing things in RoiSet · d8cb3db9
  Christopher Randolph Rhodes authored 1 month ago
  
  d8cb3db9
- Reorganizing things in RoiSet · 47fdb28d
  Christopher Randolph Rhodes authored 1 month ago
  
  47fdb28d
- Reorganizing things in RoiSet · d4ce55f1
  Christopher Randolph Rhodes authored 1 month ago
  
  d4ce55f1
- read CSVs via a utility method · a3736cc9
  Christopher Randolph Rhodes authored 1 month ago
  
  a3736cc9
- Simplify access to RoiSet dataframe outside of class · a4f81c46
  Christopher Randolph Rhodes authored 1 month ago
  
  a4f81c46
- PhenoBase no longer uses tuple columns, as this messes up starlette encoding check · 8adacdc7
  Christopher Randolph Rhodes authored 1 month ago
  
  8adacdc7
- Repaired test · e05c0677
  Christopher Randolph Rhodes authored 1 month ago
  
  e05c0677
Feb 05, 2025
- PhenoBase tests pass · 9ffb6137
  Christopher Randolph Rhodes authored 1 month ago
  
  9ffb6137
- Looking to classifications grouping for labels · 794ac163
  Christopher Randolph Rhodes authored 1 month ago
  
  794ac163
- Cleaned up coordinate indexing of RoiSets in PhenoBase · 4d9fa2bf
  Christopher Randolph Rhodes authored 1 month ago
  
  4d9fa2bf
- RoiSet tests pass on multiindex refactor · af8f4bf5
  Christopher Randolph Rhodes authored 1 month ago
  
  af8f4bf5
- Need to set using bracket notation in multiindex columns · a392c1c0
  Christopher Randolph Rhodes authored 1 month ago
  
  a392c1c0
- Refactoring to multiindex on annotators, etc. · fb61aed7
  Christopher Randolph Rhodes authored 1 month ago
  
  fb61aed7
- Updating to multiindex references · 2aadaf85
  Christopher Randolph Rhodes authored 1 month ago
  
  2aadaf85
- Updating to multiindex references · 7fb9ad54
  Christopher Randolph Rhodes authored 1 month ago
  
  7fb9ad54
- Stopped using RoiSet as iterator · 133e084c
  Christopher Randolph Rhodes authored 1 month ago
  
  133e084c
- Use df.index for label in map · e2716d88
  Christopher Randolph Rhodes authored 1 month ago
  
  e2716d88
- Harmonized column / index naming in serialization/deserialization · 1998b2fb
  Christopher Randolph Rhodes authored 1 month ago
  
  1998b2fb
- join and drop calls are scrambling index · 8caa2e95
  Christopher Randolph Rhodes authored 1 month ago
  
  8caa2e95
- Classifications columns use MultiIndex · a2b6a848
  Christopher Randolph Rhodes authored 1 month ago
  
  a2b6a848
- Use .apply notation instead of .itertuples · fe396e25
  Christopher Randolph Rhodes authored 1 month ago
  
  fe396e25
- Chasing down errors with RoiSet multiindex table · 52a08f41
  Christopher Randolph Rhodes authored 1 month ago
  
  52a08f41
Feb 04, 2025
- Started implementing multi index levels on RoiSet dataframe columns · f0b81ffe
  Christopher Randolph Rhodes authored 1 month ago
  
  f0b81ffe
- process_2d operates on numpy arrays so needs to be aligned with accessor dimensions · ba8e8b92
  Christopher Randolph Rhodes authored 1 month ago
  
  ba8e8b92
Feb 03, 2025
- Merge branch 'dev_phenobase' into 'staging' · d9023183
  Christopher Randolph Rhodes authored 1 month ago
  
  PhenoBase session API See merge request rhodes/model_server!94
  d9023183
- Repaired phenobase test validation of CSV · 85d7141b
  Christopher Randolph Rhodes authored 1 month ago
  
  85d7141b
Jan 31, 2025
- Corrected error in mono method · 39346f32
  Christopher Randolph Rhodes authored 1 month ago
  
  39346f32
Jan 30, 2025
- accessor.apply can send only YXZ data with mono=True flag · c33c980b
  Christopher Randolph Rhodes authored 1 month ago
  
  c33c980b
- accessor.apply can take optional dictionary of params to pass to functoin · a360ac43
  Christopher Randolph Rhodes authored 1 month ago
  
  a360ac43