Commits · 7c6f2c08cee0ac69beff40cb092a8cd3cf7ce66b · ALMF / SVLT · GitLab

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Aug 12, 2024
- Remove model_id and accessor_id from defaults · 7c6f2c08
  Christopher Randolph Rhodes authored 7 months ago
  
  7c6f2c08
- No longer return model_id in record · a1e85ffc
  Christopher Randolph Rhodes authored 7 months ago
  
  a1e85ffc
- Parameters auto-validates anything ending in accessor_id and model_id;... · 6735a2f7
  Christopher Randolph Rhodes authored 7 months ago
  
  Parameters auto-validates anything ending in accessor_id and model_id; call_pipeline() maps these to objects and sends to pipeline function as dicts of respective objects
  6735a2f7
Aug 09, 2024
- Lifted TODO comment · 0c1677ec
  Christopher Randolph Rhodes authored 7 months ago
  
  0c1677ec
- Intermediate data can now be kept in session context · b0b8499d
  Christopher Randolph Rhodes authored 7 months ago
  
  b0b8499d
- Added method to filter trace's accessors · fb7e1245
  Christopher Randolph Rhodes authored 7 months ago
  
  fb7e1245
- Reorganized pipeline utility method · 40db6f45
  Christopher Randolph Rhodes authored 7 months ago
  
  40db6f45
- Moving as much of pipeline code as possible to reusable functions · 5b5d39b9
  Christopher Randolph Rhodes authored 7 months ago
  
  5b5d39b9
- Superclass for pipeline parameters · f3689d5b
  Christopher Randolph Rhodes authored 7 months ago
  
  f3689d5b
- Segmentation pipeline over API raises correct HTTPException · 6a682001
  Christopher Randolph Rhodes authored 7 months ago
  
  6a682001
- Test covers accessor output from segmentation pipeline · edf40efa
  Christopher Randolph Rhodes authored 7 months ago
  
  edf40efa
- Test covers accessor output · 10beaebd
  Christopher Randolph Rhodes authored 7 months ago
  
  10beaebd
- Register output accessor to session, not yet exported · 5824cb5b
  Christopher Randolph Rhodes authored 7 months ago
  
  5824cb5b
- Added session method to get accessor object with and without popping · d02ee357
  Christopher Randolph Rhodes authored 7 months ago
  
  d02ee357
- Added and tested exception handling for unlisted accessor ID · 9c735683
  Christopher Randolph Rhodes authored 7 months ago
  
  9c735683
- Implemented list/get/add/delete accessors · b33a5047
  Christopher Randolph Rhodes authored 7 months ago
  
  b33a5047
Aug 08, 2024
- Close to implementing accessor add/delete/list to API · eb1f2d68
  Christopher Randolph Rhodes authored 7 months ago
  
  eb1f2d68
- Session can add and delete accessors to its scope · e9da5e6a
  Christopher Randolph Rhodes authored 7 months ago
  
  e9da5e6a
- Option to specify model ID · 20e3a20e
  Christopher Randolph Rhodes authored 7 months ago
  
  20e3a20e
- Removed smoothing from model method · 7f6e43da
  Christopher Randolph Rhodes authored 7 months ago
  
  7f6e43da
- Implemented and tested method to write intermediate pipeline products to file · 2464806c
  Christopher Randolph Rhodes authored 7 months ago
  
  2464806c
- Confirmed ilastik pipeline runs with new module format · 8bf70444
  Christopher Randolph Rhodes authored 7 months ago
  
  8bf70444
- Segmentation pipeline works, module is annotated · a197934e
  Christopher Randolph Rhodes authored 7 months ago
  
  a197934e
- Pixel classification pipeline is tested with smoothing parameter · 2f644dfc
  Christopher Randolph Rhodes authored 7 months ago
  
  2f644dfc
- Revised smoothing function to work with binary masks; tested accordingly · 2a8db3e2
  Christopher Randolph Rhodes authored 7 months ago
  
  2a8db3e2
Aug 07, 2024
- Merged in RoiSet polygon logic so far from YOLO dev branch · ebaf5ac1
  Christopher Randolph Rhodes authored 7 months ago
  
  ebaf5ac1
- Merge branch 'dev_roiset_coco' into dev_pipeline_and_smooth · 74f7c2aa
  Christopher Randolph Rhodes authored 7 months ago
  
  # Conflicts: # tests/test_ilastik/test_ilastik.py
  74f7c2aa
Aug 05, 2024
- Implemented simple but usable segmentation model · 5c940e41
  Christopher Randolph Rhodes authored 7 months ago
  
  5c940e41
- Marked up TODOs · d078f82f
  Christopher Randolph Rhodes authored 7 months ago
  
  d078f82f
- Last commit misplaced ilastik tests; these now all pass · cf493168
  Christopher Randolph Rhodes authored 7 months ago
  
  cf493168
- All tests pass · 943129fa
  Christopher Randolph Rhodes authored 7 months ago
  
  943129fa
- Confirmed test server starts up with additional test-specific endpoints · a117babb
  Christopher Randolph Rhodes authored 7 months ago
  
  a117babb
- Fixed relative path · a9e0ba6e
  Christopher Randolph Rhodes authored 7 months ago
  
  a9e0ba6e
- In the middle of restoring dummy tests, now declared within testing modules themselves · 1696fbee
  Christopher Randolph Rhodes authored 7 months ago
  
  1696fbee
- Still some references to dummy models in testing · 7d2a817a
  Christopher Randolph Rhodes authored 7 months ago
  
  7d2a817a
- Corrected some API tests · 56d98eae
  Christopher Randolph Rhodes authored 7 months ago
  
  56d98eae
- Removed many dummy tests; but still hitting errors in test_api · 5bc75c0c
  Christopher Randolph Rhodes authored 7 months ago
  
  5bc75c0c
- Removed testing of dummy endpoints completely · 5d4edf40
  Christopher Randolph Rhodes authored 7 months ago
  
  5d4edf40
- Partial merge of dev_pipeline_refactor · 5cfec166
  Christopher Randolph Rhodes authored 7 months ago
  
  5cfec166
- Corrected Gaussian smoothing in pixel map · 9331b28a
  Christopher Randolph Rhodes authored 7 months ago
  
  9331b28a