Commits · 7f6e43da5c3f359ee24e88becf5d2a8a6a167ea6 · ALMF / SVLT · GitLab

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Aug 08, 2024
- Removed smoothing from model method · 7f6e43da
  Christopher Randolph Rhodes authored 7 months ago
  
  7f6e43da
- Implemented and tested method to write intermediate pipeline products to file · 2464806c
  Christopher Randolph Rhodes authored 7 months ago
  
  2464806c
- Confirmed ilastik pipeline runs with new module format · 8bf70444
  Christopher Randolph Rhodes authored 7 months ago
  
  8bf70444
- Segmentation pipeline works, module is annotated · a197934e
  Christopher Randolph Rhodes authored 7 months ago
  
  a197934e
- Pixel classification pipeline is tested with smoothing parameter · 2f644dfc
  Christopher Randolph Rhodes authored 7 months ago
  
  2f644dfc
- Revised smoothing function to work with binary masks; tested accordingly · 2a8db3e2
  Christopher Randolph Rhodes authored 7 months ago
  
  2a8db3e2
Aug 07, 2024
- Merged in RoiSet polygon logic so far from YOLO dev branch · ebaf5ac1
  Christopher Randolph Rhodes authored 7 months ago
  
  ebaf5ac1
- Merge branch 'dev_roiset_coco' into dev_pipeline_and_smooth · 74f7c2aa
  Christopher Randolph Rhodes authored 7 months ago
  
  # Conflicts: # tests/test_ilastik/test_ilastik.py
  74f7c2aa
Aug 05, 2024
- Implemented simple but usable segmentation model · 5c940e41
  Christopher Randolph Rhodes authored 7 months ago
  
  5c940e41
- Marked up TODOs · d078f82f
  Christopher Randolph Rhodes authored 7 months ago
  
  d078f82f
- Last commit misplaced ilastik tests; these now all pass · cf493168
  Christopher Randolph Rhodes authored 7 months ago
  
  cf493168
- All tests pass · 943129fa
  Christopher Randolph Rhodes authored 7 months ago
  
  943129fa
- Confirmed test server starts up with additional test-specific endpoints · a117babb
  Christopher Randolph Rhodes authored 7 months ago
  
  a117babb
- Fixed relative path · a9e0ba6e
  Christopher Randolph Rhodes authored 7 months ago
  
  a9e0ba6e
- In the middle of restoring dummy tests, now declared within testing modules themselves · 1696fbee
  Christopher Randolph Rhodes authored 7 months ago
  
  1696fbee
- Still some references to dummy models in testing · 7d2a817a
  Christopher Randolph Rhodes authored 7 months ago
  
  7d2a817a
- Corrected some API tests · 56d98eae
  Christopher Randolph Rhodes authored 7 months ago
  
  56d98eae
- Removed many dummy tests; but still hitting errors in test_api · 5bc75c0c
  Christopher Randolph Rhodes authored 7 months ago
  
  5bc75c0c
- Removed testing of dummy endpoints completely · 5d4edf40
  Christopher Randolph Rhodes authored 7 months ago
  
  5d4edf40
- Partial merge of dev_pipeline_refactor · 5cfec166
  Christopher Randolph Rhodes authored 7 months ago
  
  5cfec166
- Corrected Gaussian smoothing in pixel map · 9331b28a
  Christopher Randolph Rhodes authored 7 months ago
  
  9331b28a
Aug 02, 2024
- Overlap tests pass; getting pandas warning · b51fec7e
  Christopher Randolph Rhodes authored 7 months ago
  
  b51fec7e
- filter_df_overlap_bbox now includes both sides of an overlapping Roi pair as separate rows · 1de55e7c
  Christopher Randolph Rhodes authored 7 months ago
  
  1de55e7c
- filter_df_overlap_bbox does not include "second" ROI in index so can be incomplete · 1de38621
  Christopher Randolph Rhodes authored 7 months ago
  
  1de38621
Aug 01, 2024
- Implemented and tested creation of RoiSet from polygon coordinates · 799f2ea5
  Christopher Randolph Rhodes authored 7 months ago
  
  799f2ea5
- Docstring and assertion in polymer fit · c6656826
  Christopher Randolph Rhodes authored 7 months ago
  
  c6656826
- Removed additional cases where accessor data was sliced directly · c87d3bb1
  Christopher Randolph Rhodes authored 7 months ago
  
  c87d3bb1
- Test cover use .data_xy and .data_xyz properties · 75dca594
  Christopher Randolph Rhodes authored 7 months ago
  
  75dca594
- Added convenience property to get XYZ ndarray on mono arrays · d29a9d6b
  Christopher Randolph Rhodes authored 7 months ago
  
  d29a9d6b
- Added convenience property to get XY ndarray on flattened, mono arrays · 22478a7d
  Christopher Randolph Rhodes authored 7 months ago
  
  22478a7d
Jul 31, 2024
- Implemented polygon fitting · 531fac85
  Christopher Randolph Rhodes authored 8 months ago
  
  531fac85
Jul 26, 2024
- Test build today · 019156dd
  Christopher Randolph Rhodes authored 8 months ago
  
  019156dd
Jul 24, 2024
- Merge branch 'staging' into dev_roiset_coco · 36de097e
  Christopher Randolph Rhodes authored 8 months ago
  
  36de097e
Jul 22, 2024
- Merge branch 'trec-adaptive-feedback-issue0014' into 'staging' · 2a1db0ad
  Christopher Randolph Rhodes authored 8 months ago
  
  Trec adaptive feedback issue0014 See merge request rhodes/model_server!55
  2a1db0ad
- Adopt relative path for server configuration · d82e811b
  Christopher Randolph Rhodes authored 8 months ago
  
  d82e811b
- Validation changes to make ilastik object classification argument optional · f002f440
  Christopher Randolph Rhodes authored 8 months ago
  
  f002f440
Jul 18, 2024
- Untested create from Bounding boxes · b257dfe4
  Christopher Randolph Rhodes authored 8 months ago
  
  b257dfe4
Jul 17, 2024
- Added docstring · 978adaf9
  Christopher Randolph Rhodes authored 8 months ago
  
  978adaf9
- Object classification and object map creation are now separate functions; no... · 6f12d7e9
  Christopher Randolph Rhodes authored 8 months ago
  
  Object classification and object map creation are now separate functions; no longer persist object maps.
  6f12d7e9
- Removed focal point projection · 2c7493d6
  Christopher Randolph Rhodes authored 8 months ago
  
  2c7493d6