- Nov 29, 2024
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Christopher Randolph Rhodes authored
Deserialization does not solve deprojection a second time; a deprojected RoiSet is serialized as 3D. Tight patch mask format depends on dimensions of ROIs themselves, so 2d PNGs are possible in a 3D set if no ROI is thicker than 1
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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- Nov 28, 2024
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Christopher Randolph Rhodes authored
Applied same optimization to binary mask computation, but this still his memory issue on large dataset
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Christopher Randolph Rhodes authored
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- Nov 27, 2024
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
Gradually handling three different cases of RoiStack: pure 2d, pure 3d, mixed (3d stack, 2d deprojected object IDs)
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
Parameterized option to create unique subdirectory for each RoiSet, but this still isn't propagating to dataframe called in .serialize
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- Nov 26, 2024
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
# Conflicts: # model_server/base/api.py # model_server/base/roiset.py # tests/base/test_roiset_pipeline.py
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
RoiSet.run_exports and .get_export_product_accessors no longer take a channel directly, but rather pull these from parameters of individual patch products
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- Nov 25, 2024
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
Requirements for building on cluster See merge request rhodes/model_server!79
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
# Conflicts: # tests/base/test_roiset_pipeline.py
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Christopher Randolph Rhodes authored
Updated tests: smoothing is now more aggressive, lowered threshold of IOU for comparison; task endpoints updated
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Christopher Randolph Rhodes authored
Updated tests: smoothing is now more aggressive, lowered threshold of IOU for comparison; task endpoints updated
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Christopher Randolph Rhodes authored
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