Commits · 8f7dba9b02c13eb823e9a3fb2050ad7678457364 · ALMF / SVLT

Oct 26, 2023
- Restored batch example to a working state, confirmed batch jobs run · 8f7dba9b
  Christopher Randolph Rhodes authored 1 year ago
  
  8f7dba9b
Oct 25, 2023
- Documented utility functions for batch running · e6ba8694
  Christopher Randolph Rhodes authored 1 year ago
  
  e6ba8694
Oct 19, 2023
- Trying to run 2d kristineberg data through z-stack pipeline · 0c3a9a03
  Christopher Randolph Rhodes authored 1 year ago
  
  0c3a9a03
Oct 12, 2023
- Working on export zstack of object labels for ilastik ingest · 6f3aae76
  Christopher Randolph Rhodes authored 1 year ago
  
  6f3aae76
- Moved more of batch runner into utility methods · cd2fe9b8
  Christopher Randolph Rhodes authored 1 year ago
  
  cd2fe9b8
- Cleaned up batch runner script with filepath utility functions · 7695e1f0
  Christopher Randolph Rhodes authored 1 year ago
  
  7695e1f0
- Exposed export product flags in batch runner · b7738938
  Christopher Randolph Rhodes authored 1 year ago
  
  b7738938
Oct 11, 2023

Maintain DataFrame index throughout workflow, export patch filenames and... · 8fd758a5

Christopher Randolph Rhodes authored 1 year ago

Maintain DataFrame index throughout workflow, export patch filenames and complete source filepaths to workflow DataFrame; prepopulate patch UUID

8fd758a5

Oct 10, 2023
- Chasing down bug in overlay annotations · aade8740
  Christopher Randolph Rhodes authored 1 year ago
  
  aade8740
Oct 09, 2023
- Auto-increment folder number from highest number in root folder, tolerant of deleted intermediaries · c3a620f0
  Christopher Randolph Rhodes authored 1 year ago
  
  c3a620f0
- Batch-export 3d patches and table of focus metrics; optionally annotate... · c35f657e
  Christopher Randolph Rhodes authored 1 year ago
  
  Batch-export 3d patches and table of focus metrics; optionally annotate bounding box at plane of best focus
  c35f657e
Oct 08, 2023
- comments only · ac54d240
  Christopher Randolph Rhodes authored 1 year ago
  
  ac54d240
Oct 05, 2023
- Prototyping adaptive sobel-based projection within 3d patch export · 4f53ce0c
  Christopher Randolph Rhodes authored 1 year ago
  
  4f53ce0c
- Finished implementing point-based projection · 8a5486aa
  Christopher Randolph Rhodes authored 1 year ago
  
  8a5486aa
- Tested operation to flatten image based on focal points from body mask · 1092b9c5
  Christopher Randolph Rhodes authored 1 year ago
  
  1092b9c5
- Batch runner passes only JSON-normalized data to workflow, and saves this to CSV for each iteration · 4aacaa00
  Christopher Randolph Rhodes authored 1 year ago
  
  4aacaa00
- Working on JSON dump of run data · 50eb5c6e
  Christopher Randolph Rhodes authored 1 year ago
  
  50eb5c6e
- Fine-tuning export job · f84c6411
  Christopher Randolph Rhodes authored 1 year ago
  
  f84c6411
- Keep all objects in dataframe and apply filter only inside zmask object loop · 672ec3d3
  Christopher Randolph Rhodes authored 1 year ago
  
  672ec3d3
- Moved examples to chaeo subpackage · de7892aa
  Christopher Randolph Rhodes authored 1 year ago
  
  de7892aa
Sep 29, 2023
- Pass and export object dataframes, as well as timer results · 6f064829
  Christopher Randolph Rhodes authored 1 year ago
  
  6f064829
- Batch export of patches and annotated 2d images is now working · 03d43bf2
  Christopher Randolph Rhodes authored 1 year ago
  
  03d43bf2