Commits · dce34bcf9dbb5cf0878423b6172ccdf690ca0a37 · ALMF / SVLT · GitLab

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Aug 15, 2024
- Implemented hierarchical routing · dce34bcf
  Christopher Randolph Rhodes authored 7 months ago
  
  dce34bcf
- Fixed bug where empty RoiSet throws error when calling classify_by · 8ed6d1fb
  Christopher Randolph Rhodes authored 7 months ago
  
  8ed6d1fb
- Added second segmentation pipeline with specific z-stack processing · 24019338
  Christopher Randolph Rhodes authored 7 months ago
  
  24019338
- Added mip convenience function · ce07f4c6
  Christopher Randolph Rhodes authored 7 months ago
  
  ce07f4c6
Aug 14, 2024
- Separated out derived channel functionality from main RoiSet class and tests · 6b416419
  Christopher Randolph Rhodes authored 7 months ago
  
  6b416419
Aug 13, 2024
- Consolidated some recurring steps in API testing · 24ab120e
  Christopher Randolph Rhodes authored 7 months ago
  
  24ab120e
- Expose method to get dataframe in a format that is JSON-serializable · 5d04888b
  Christopher Randolph Rhodes authored 7 months ago
  
  5d04888b
- First test passes on direct pipeline call with accessors · a295a72d
  Christopher Randolph Rhodes authored 7 months ago
  
  a295a72d
Aug 12, 2024
- Can read accessor from file with name in path itself · 58f2e40f
  Christopher Randolph Rhodes authored 7 months ago
  
  58f2e40f
- Parameters auto-validates anything ending in accessor_id and model_id;... · 6735a2f7
  Christopher Randolph Rhodes authored 7 months ago
  
  Parameters auto-validates anything ending in accessor_id and model_id; call_pipeline() maps these to objects and sends to pipeline function as dicts of respective objects
  6735a2f7
Aug 09, 2024
- Intermediate data can now be kept in session context · b0b8499d
  Christopher Randolph Rhodes authored 7 months ago
  
  b0b8499d
- Moving as much of pipeline code as possible to reusable functions · 5b5d39b9
  Christopher Randolph Rhodes authored 7 months ago
  
  5b5d39b9
- Test covers accessor output from segmentation pipeline · edf40efa
  Christopher Randolph Rhodes authored 7 months ago
  
  edf40efa
- Test covers accessor output · 10beaebd
  Christopher Randolph Rhodes authored 7 months ago
  
  10beaebd
- Register output accessor to session, not yet exported · 5824cb5b
  Christopher Randolph Rhodes authored 7 months ago
  
  5824cb5b
- Added session method to get accessor object with and without popping · d02ee357
  Christopher Randolph Rhodes authored 7 months ago
  
  d02ee357
- Added and tested exception handling for unlisted accessor ID · 9c735683
  Christopher Randolph Rhodes authored 7 months ago
  
  9c735683
- Implemented list/get/add/delete accessors · b33a5047
  Christopher Randolph Rhodes authored 7 months ago
  
  b33a5047
Aug 08, 2024
- Close to implementing accessor add/delete/list to API · eb1f2d68
  Christopher Randolph Rhodes authored 7 months ago
  
  eb1f2d68
- Session can add and delete accessors to its scope · e9da5e6a
  Christopher Randolph Rhodes authored 7 months ago
  
  e9da5e6a
- Implemented and tested method to write intermediate pipeline products to file · 2464806c
  Christopher Randolph Rhodes authored 7 months ago
  
  2464806c
- Segmentation pipeline works, module is annotated · a197934e
  Christopher Randolph Rhodes authored 7 months ago
  
  a197934e
- Pixel classification pipeline is tested with smoothing parameter · 2f644dfc
  Christopher Randolph Rhodes authored 7 months ago
  
  2f644dfc
- Revised smoothing function to work with binary masks; tested accordingly · 2a8db3e2
  Christopher Randolph Rhodes authored 7 months ago
  
  2a8db3e2
Aug 05, 2024
- Implemented simple but usable segmentation model · 5c940e41
  Christopher Randolph Rhodes authored 7 months ago
  
  5c940e41
- Last commit misplaced ilastik tests; these now all pass · cf493168
  Christopher Randolph Rhodes authored 7 months ago
  
  cf493168
- All tests pass · 943129fa
  Christopher Randolph Rhodes authored 7 months ago
  
  943129fa
- Confirmed test server starts up with additional test-specific endpoints · a117babb
  Christopher Randolph Rhodes authored 7 months ago
  
  a117babb
- In the middle of restoring dummy tests, now declared within testing modules themselves · 1696fbee
  Christopher Randolph Rhodes authored 7 months ago
  
  1696fbee
- Still some references to dummy models in testing · 7d2a817a
  Christopher Randolph Rhodes authored 7 months ago
  
  7d2a817a
- Corrected some API tests · 56d98eae
  Christopher Randolph Rhodes authored 7 months ago
  
  56d98eae
- Removed many dummy tests; but still hitting errors in test_api · 5bc75c0c
  Christopher Randolph Rhodes authored 7 months ago
  
  5bc75c0c
- Removed testing of dummy endpoints completely · 5d4edf40
  Christopher Randolph Rhodes authored 7 months ago
  
  5d4edf40
Aug 02, 2024
- Overlap tests pass; getting pandas warning · b51fec7e
  Christopher Randolph Rhodes authored 7 months ago
  
  b51fec7e
- filter_df_overlap_bbox now includes both sides of an overlapping Roi pair as separate rows · 1de55e7c
  Christopher Randolph Rhodes authored 7 months ago
  
  1de55e7c
- filter_df_overlap_bbox does not include "second" ROI in index so can be incomplete · 1de38621
  Christopher Randolph Rhodes authored 7 months ago
  
  1de38621
Aug 01, 2024
- Implemented and tested creation of RoiSet from polygon coordinates · 799f2ea5
  Christopher Randolph Rhodes authored 7 months ago
  
  799f2ea5
- Docstring and assertion in polymer fit · c6656826
  Christopher Randolph Rhodes authored 7 months ago
  
  c6656826
- Removed additional cases where accessor data was sliced directly · c87d3bb1
  Christopher Randolph Rhodes authored 7 months ago
  
  c87d3bb1
Jul 31, 2024
- Implemented polygon fitting · 531fac85
  Christopher Randolph Rhodes authored 8 months ago
  
  531fac85