Commits · edf40efa7db15251a0846c49cd56ef63802cf3a7 · ALMF / SVLT · GitLab

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Aug 09, 2024
- Test covers accessor output from segmentation pipeline · edf40efa
  Christopher Randolph Rhodes authored 7 months ago
  
  edf40efa
- Test covers accessor output · 10beaebd
  Christopher Randolph Rhodes authored 7 months ago
  
  10beaebd
- Register output accessor to session, not yet exported · 5824cb5b
  Christopher Randolph Rhodes authored 7 months ago
  
  5824cb5b
- Added session method to get accessor object with and without popping · d02ee357
  Christopher Randolph Rhodes authored 7 months ago
  
  d02ee357
- Added and tested exception handling for unlisted accessor ID · 9c735683
  Christopher Randolph Rhodes authored 7 months ago
  
  9c735683
- Implemented list/get/add/delete accessors · b33a5047
  Christopher Randolph Rhodes authored 7 months ago
  
  b33a5047
Aug 08, 2024
- Close to implementing accessor add/delete/list to API · eb1f2d68
  Christopher Randolph Rhodes authored 7 months ago
  
  eb1f2d68
- Session can add and delete accessors to its scope · e9da5e6a
  Christopher Randolph Rhodes authored 7 months ago
  
  e9da5e6a
- Option to specify model ID · 20e3a20e
  Christopher Randolph Rhodes authored 7 months ago
  
  20e3a20e
- Removed smoothing from model method · 7f6e43da
  Christopher Randolph Rhodes authored 7 months ago
  
  7f6e43da
- Implemented and tested method to write intermediate pipeline products to file · 2464806c
  Christopher Randolph Rhodes authored 7 months ago
  
  2464806c
- Confirmed ilastik pipeline runs with new module format · 8bf70444
  Christopher Randolph Rhodes authored 7 months ago
  
  8bf70444
- Segmentation pipeline works, module is annotated · a197934e
  Christopher Randolph Rhodes authored 7 months ago
  
  a197934e
- Pixel classification pipeline is tested with smoothing parameter · 2f644dfc
  Christopher Randolph Rhodes authored 7 months ago
  
  2f644dfc
- Revised smoothing function to work with binary masks; tested accordingly · 2a8db3e2
  Christopher Randolph Rhodes authored 7 months ago
  
  2a8db3e2
Aug 07, 2024
- Merged in RoiSet polygon logic so far from YOLO dev branch · ebaf5ac1
  Christopher Randolph Rhodes authored 7 months ago
  
  ebaf5ac1
- Merge branch 'dev_roiset_coco' into dev_pipeline_and_smooth · 74f7c2aa
  Christopher Randolph Rhodes authored 7 months ago
  
  # Conflicts: # tests/test_ilastik/test_ilastik.py
  74f7c2aa
Aug 05, 2024
- Implemented simple but usable segmentation model · 5c940e41
  Christopher Randolph Rhodes authored 7 months ago
  
  5c940e41
- Marked up TODOs · d078f82f
  Christopher Randolph Rhodes authored 7 months ago
  
  d078f82f
- Last commit misplaced ilastik tests; these now all pass · cf493168
  Christopher Randolph Rhodes authored 7 months ago
  
  cf493168
- All tests pass · 943129fa
  Christopher Randolph Rhodes authored 7 months ago
  
  943129fa
- Confirmed test server starts up with additional test-specific endpoints · a117babb
  Christopher Randolph Rhodes authored 7 months ago
  
  a117babb
- Fixed relative path · a9e0ba6e
  Christopher Randolph Rhodes authored 7 months ago
  
  a9e0ba6e
- In the middle of restoring dummy tests, now declared within testing modules themselves · 1696fbee
  Christopher Randolph Rhodes authored 7 months ago
  
  1696fbee
- Still some references to dummy models in testing · 7d2a817a
  Christopher Randolph Rhodes authored 7 months ago
  
  7d2a817a
- Corrected some API tests · 56d98eae
  Christopher Randolph Rhodes authored 7 months ago
  
  56d98eae
- Removed many dummy tests; but still hitting errors in test_api · 5bc75c0c
  Christopher Randolph Rhodes authored 7 months ago
  
  5bc75c0c
- Removed testing of dummy endpoints completely · 5d4edf40
  Christopher Randolph Rhodes authored 7 months ago
  
  5d4edf40
- Partial merge of dev_pipeline_refactor · 5cfec166
  Christopher Randolph Rhodes authored 7 months ago
  
  5cfec166
- Corrected Gaussian smoothing in pixel map · 9331b28a
  Christopher Randolph Rhodes authored 7 months ago
  
  9331b28a
Aug 02, 2024
- Overlap tests pass; getting pandas warning · b51fec7e
  Christopher Randolph Rhodes authored 7 months ago
  
  b51fec7e
- filter_df_overlap_bbox now includes both sides of an overlapping Roi pair as separate rows · 1de55e7c
  Christopher Randolph Rhodes authored 7 months ago
  
  1de55e7c
- filter_df_overlap_bbox does not include "second" ROI in index so can be incomplete · 1de38621
  Christopher Randolph Rhodes authored 7 months ago
  
  1de38621
Aug 01, 2024
- Implemented and tested creation of RoiSet from polygon coordinates · 799f2ea5
  Christopher Randolph Rhodes authored 7 months ago
  
  799f2ea5
- Docstring and assertion in polymer fit · c6656826
  Christopher Randolph Rhodes authored 7 months ago
  
  c6656826
- Removed additional cases where accessor data was sliced directly · c87d3bb1
  Christopher Randolph Rhodes authored 7 months ago
  
  c87d3bb1
- Test cover use .data_xy and .data_xyz properties · 75dca594
  Christopher Randolph Rhodes authored 7 months ago
  
  75dca594
- Added convenience property to get XYZ ndarray on mono arrays · d29a9d6b
  Christopher Randolph Rhodes authored 7 months ago
  
  d29a9d6b
- Added convenience property to get XY ndarray on flattened, mono arrays · 22478a7d
  Christopher Randolph Rhodes authored 7 months ago
  
  22478a7d
Jul 31, 2024
- Implemented polygon fitting · 531fac85
  Christopher Randolph Rhodes authored 8 months ago
  
  531fac85