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ALMF
SVLT
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00c4ad9bf0047d1cc762461395401f7f2467d9da
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6
37-unnecessary-for-loop-in-rois-features
dev-nda-stream
dev_patch_viz
master
default
protected
migrate_model_server
staging
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2024.10.01
2024.06.03
2024.04.19
2024.03.01
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Created with Raphaël 2.2.0
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Added alternate constructor for RoiSet from either YX or YXZ monochromatic data
Fine-tuned formatting and references to patch export products
Parameterized option to create unique subdirectory for each RoiSet, but this still isn't propagating to dataframe called in .serialize
Accessor convenience property for either data_yx or data_yxz depending on dimensionality
Patches are exported to subdirectory named by prefix argument
Filelist is reindexed after resolving multiposition files
Batch runner outputs position index for multiposition files
Batch runner successfully reads multiposition input files
Confirm that multiposition object knows its length before lazy-loading data
Can create multiple accessors from single multiposition CZI over API
Separate out ndarray and Accessor functions
Added function to route multiposition file import
Merged in changes from remote
Merged in changes from remote
Merge remote-tracking branch 'origin/dev_batch_multiple_dirs' into dev_batch_multiple_dirs
Propagated channel parameter change to FastAPI methods, too
RoiSet.run_exports and .get_export_product_accessors no longer take a channel directly, but rather pull these from parameters of individual patch products
Merge branch 'staging' into dev_batch_multiple_dirs
Merge branch 'dev-cluster-build' into 'staging'
Specified python version, needed to solve environment on cluster
Merge remote-tracking branch 'origin/dev_batch_multiple_dirs' into dev_batch_multiple_dirs
Updated tests: smoothing is now more aggressive, lowered threshold of IOU for comparison; task endpoints updated
Updated tests: smoothing is now more aggressive, lowered threshold of IOU for comparison; task endpoints updated
Repaired a couple tests failing because of changes to dtype propagation in .apply
Default smoothing to 0.5
label_pixel_class returns bool again
Introduced post-smoothing threshold when rebinarizing floating-point gaussian smoothing
Write patches to subdirectories by their stack association
Write copy of file list to output directory
Some tests are still failing but able to start batch job
PatchStack is not lazy
Specify YXZ data to image processing
Default assume that accessors are not lazy; add_accessor then overrides this if a lazy accessor is subsequently bound to this ID
Access [0, 1] arrays as masks, too
Added lazy property that is used by sessions when solving dependencies
Client reports when tasks in "waiting" state are left behind
Repaired uint8 overrun in intensity-weighted argmax, this improved results in TREC set dramatically
Optional intensity threshold for weight deprojection
Adjusted threshold so that test passes, this must have changed with alternate deprojection
Progress exporting RoiSet products but deleting accessors accidentally takes out the wrong thing
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