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Created with Raphaël 2.2.028Jan272422920Dec1814131110976530Nov2928272625222120191815141211109432131Oct3028272625222015141372130Sep2624232013126315Aug14131298752131Jul2624221817161585432124Jun2010765330May22876326AprEndpoint to generically add a RoiSet to PhenoBase is working and covered; would still like to add optional export products and test with multiple ROIsRemoved redundant TestCase that was redeclaredWrite patches to subdirectories by defaultDefault to no expansion of ROIsMoved roiset pipeline handler to same shared moduleAdded docstringsShared pipeline handler to register RoiSet into sessionAPI method to list entire phenobase tableMerge remote-tracking branch 'origin/dev_phenobase' into dev_phenobaseTest covers addition of zero-length RoiSetSession initializes and inserts into PhenoBaseSession initializes and inserts into PhenoBaseAdded method to initiate from RoiSet objectPhenoBase.push gets only patch parameters, not full export parametersRemoved table registration from SessionShared pipeline handler to register RoiSet into sessionPhenoBase validates uniqueness of RoiSet key.push method validates patch sets are specified in RoiSet export parametersTests cover RoiSet push still working out what to do when exporting patchesCan now index RoiSets by a dictionary of multiple entriesAdded test coverage of sampling methodNow moving to session and API hooks for phenobaseTest on phenobase update passesImplemented phenobase update method but not passing test yetImplemented phenobase update method but not passing test yetRemoved check on PatchStack dimensionsTests cover patch stack products of PhenoBasePhenoBase know patch series nameTests cover classification results from RoiSet APIUnlabeled PhenoBase is allowedTest covers reading serialized datasets into phenobaseMoved phenobase module to main codebase; set up testingMerge branch 'staging' of git.embl.de:rhodes/model_servermigrate_model_s…migrate_model_serverMerge branch 'issue_0075' into 'staging'Tests also cover overlapping segmentations with nonzero ROI indexRepaired indexing error in cases of overlapping bounding boxesRecreated error from label transfer by overlapMerge branch 'issue_0073' into 'staging'Merge in accessor IDs based on search of parent directories, instead of re-creating stack table entirely and reseting index.Merge branch 'dev_memory_profile' into 'staging'