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Created with Raphaël 2.2.025Mar222176429Feb282019157653226Jan259822Dec21201913Nov10763231Oct30272625222019181716141312111098529Sep2827262513127654131Aug302928242322Merge branch 'roiset_api' into 'staging'Revert "Temporary error-handling for debug..."Temporary error-handling for debug...Stopped assuming that object is identified in patchParameterize reload to command line optionParameterize reload to command line optionReload False by default, just to be conservativeParameterize auto-reload and deactivate daemon accordinglyEnable uvicorn reload by defaultChanged text of warningsChanged text of warningsTesting server verification...Added method to verify server is upAdded method to verify server is upMerge branch 'persist_roiset_data' into 'staging'Added generic persistent table functionality to SessionMerge branch 'patch_stack_one_channel' into 'staging'RoiSet now classifies objects on a patch basis via .label_patch_stack methodImprove normalization when generating instance segmentation modelMerge branch 'patch_stack_one_channel' into 'staging'Correct error when trying to extract a single channel from a PatchStackMerge branch 'ilastik_px_predictions_to_instance_seg' into 'staging'Generate an InstanceSegmentationModel from an IlastikObjectClassifierFromPixelPredictionsModel given binarization parametersMerge branch 'ilastik_model_validation' into 'staging'Set default values for time, color, and z-axes in ilastik model validationMerge branch '4-events-are-not-logged-to-session-manifest' into 'staging'Merge branch '1-ilastik-models-do-not-validate-dimensionality-of-input-data' into 'staging'Removed manifest JSON from sessionReport out session logs on APIMoved session restart endpointLogged ilastik eventsRemoved JSON manifest file, logged summaries to logging service insteadChanged log entry formattingCleaned up testsMerge branch 'issue0017' into expose_session_logs_in_apiCleared up issues with Singleton behavior, largely confused by the fact this python logger itself is a Singleton that persists between testsMocked up session logging implementation using python log service; two tests are failing apparently due to Session singleton-related issuesValidate chroma and dimensionality of inputs to pixel classification modelTest of patch object classification now explicitly excludes single pixels that are labeled differentlyRemoved PatchStackObjectClassifier, merged this behavior into IlastikObjectClassifierFromSegmentationModel