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Created with Raphaël 2.2.025Mar242221201918171454314Feb131287654331Jan302928272422920Dec1814131110976530Nov2928272625222120191815141211109432131Oct3028272625222015141372130Sep2624232013126315Aug141312Square bounding box is mostly implemented, no strictly square when at boundariesdev-phenobase-c…dev-phenobase-clientCorrected mistake in relative bounding boxes that was decentering patch masks when expandedPatch masks are expanded, just not centeredNo need for warning nowRoiSet constructor enforces at least 2 x 2 (h x w) ROIsAutowrite phenobase.csv everytime a RoiSet is pushedMaintain int types when writing phenobase dataframePhenoBase table was written to session folder, client now properly sets this to output folderMerge branch 'dev-phenobase' into 'master'mastermasterTest pipeline thresholds on channel 1 nowWrote docstrings and cleaned up return typesDo not verify optional modelsAssertions cover exported patches organized by classificationCan write single-tif patch stacks by classification categoryTestAddRoiSetOverApi.test_add_roiset now uses labeling parameter to get an RoiSet with > 1 ROIPrototyped method to write patches in subdirectories by classification name and classTest asserts that a patch is writtenClient writes PhenoBase data to the correct locationSet up RoiSet export endpoint in PhenoBase batch job, but not yet passingSet up RoiSet export endpoint in PhenoBase batch job, but not yet passingMinor corrections during unittestingRemoved filter and chroma methodsExpose info dictionary in blocks, including unloaded onesUpdated deprecated pydantic methodTest of phenobase client passesOutput test date lateral with fixtures directory, not inside itSpecify classification name when getting object mapsRead classifications from serialized RoiSets, tooPhenoBase can optionally read coodinate keys and patch series upon push first RoiSetConsolidated add_roiset and read functions, just can't figure out how to merge patches columns before (or after) add_roiset()Revised add_roiset method and now trying to transfer in patch paths on batch importNeed to set patch series, model label keys on first push/read RoiSet eventTests pass with revised RoiSet info structureCorrected strange side effect that resulted from default {} in argumentChanged organization of classifer metadata in RoiSet, which now defers the specifics to model.info; made this optional in deserializationRemove repeat of methodRemoved some phenobase tests; still need to determine how session_phenobase gets its coordinate keys and patch setsRemoved some phenobase tests; still need to determine how session_phenobase gets its coordinate keys and patch setsPhenoBase checks that classification / label columns matchClassification labels and keys are stored in RoiSet classification_meta and serialized/deserialized via JSON info file