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Created with Raphaël 2.2.019Apr17151211109543229Mar2825222176429Feb282019157653226Jan259822Dec21201913Nov10763231Oct30272625222019181716141312111098529Sep2827262513127654131Aug302928242322Merge branch 'master' into 'staging'Merge branch 'release-2024.04.19' into 'master'2024.04.192024.04.19Rebuilding release branch to resolve conflicts where master is ahead of stagingMerge branch 'staging' into release-2024.04.19Merge branch 'dev_disable_convert_obj_model' into 'staging'Merge branch 'staging' into dev_disable_convert_obj_modelDisabled generation of ilastik object model that receives segmentation masks from one that receives pixel probabilities; this was causing inaccurate resultsMerge branch 'dev_check_ilastik_workflow' into 'staging'Report expected class of model, not actual class of shellMerge branch 'dev_imagej_testing' into 'staging'No more 404 from ilastik loading exceptionMore verbose error when matching input and model dimensionalityBetter not to wrap things in 404s, makes it hard to debugSupport patch stacks on ilastik object model that take pixel predictionsSupport patch stacks on ilastik object model that take pixel predictionsDon't assume YXCZ stack when creating accessorDon't assume YXCZ stack when creating accessorDon't assume YXCZ stack when creating accessorMerge branch 'dev_multi_obj_patch' into 'staging'Confirmed body data is passed to PUT, removing temp test scriptAccept body data in PUTTemporary testing script for client in ImageJ environmentSeparate _put arguments for query and JSON-encoded body data in test client; test case showing pydantic model is required for list argsMethod to export derived channels as patch stacksTesting access to derived channels for .accs_derivedAdded doc string to explain callables for derived channelsCleaned up print statements in testPass function handles to add derived classes to object classificationPatchStack clones as PatchStack, others as InMemoryImageAccessorPatchStack clones as PatchStack, others as InMemoryImageAccessorCreate new accessor for given channelsConvenience methods for multiple channel slices in accessorsRoiSet can passes multiple input channels to object classifierAdded accessor method to get multiple channelsAdded option to automatically rotate patches in a nonuniform list such that height is always greater than or equal to width; this is a big data reduction for collections of elongated patchesHandle sporadic ilastik error when patches are close in size to largest filtersCall pixel classification to pixel probability map on patch stacks's cropped dataCall pixel classification to boolean mask on patch stacks's cropsPatchStack remembers crop boundaries of individual patches if created from list of non-matching patchesUse OrderedDict for timer events