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Created with Raphaël 2.2.06Feb54331Jan302928272422920Dec1814131110976530Nov2928272625222120191815141211109432131Oct3028272625222015141372130Sep2624232013126315Aug14131298752131Jul2624221817161585432124Jun20107653Simplify access to RoiSet dataframe outside of classPhenoBase no longer uses tuple columns, as this messes up starlette encoding checkRepaired testMerge branch 'dev_batch_runner' into 'staging'Batch runner allows pattern matching of subdirectoriesPhenoBase tests passLooking to classifications grouping for labelsCleaned up coordinate indexing of RoiSets in PhenoBaseRoiSet tests pass on multiindex refactorNeed to set using bracket notation in multiindex columnsRefactoring to multiindex on annotators, etc.Updating to multiindex referencesUpdating to multiindex referencesStopped using RoiSet as iteratorUse df.index for label in mapHarmonized column / index naming in serialization/deserializationjoin and drop calls are scrambling indexClassifications columns use MultiIndexUse .apply notation instead of .itertuplesChasing down errors with RoiSet multiindex tableStarted implementing multi index levels on RoiSet dataframe columnsprocess_2d operates on numpy arrays so needs to be aligned with accessor dimensionsMerge branch 'dev_phenobase' into 'staging'Repaired phenobase test validation of CSVCorrected error in mono methodaccessor.apply can send only YXZ data with mono=True flagaccessor.apply can take optional dictionary of params to pass to functoinPass complete RoiSetExportParams to add_roiset, not just the patchesAutomatically write phenobase CSV after an RoiSet is pushedEndpoint to generically add a RoiSet to PhenoBase is working and covered; would still like to add optional export products and test with multiple ROIsRemoved redundant TestCase that was redeclaredWrite patches to subdirectories by defaultDefault to no expansion of ROIsMoved roiset pipeline handler to same shared moduleAdded docstringsShared pipeline handler to register RoiSet into sessionAPI method to list entire phenobase tableMerge remote-tracking branch 'origin/dev_phenobase' into dev_phenobaseTest covers addition of zero-length RoiSetSession initializes and inserts into PhenoBase