Skip to content
Snippets Groups Projects
Select Git revision
  • 37-unnecessary-for-loop-in-rois-features
  • dev-nda-stream
  • dev-phenobase
  • dev_patch_viz
  • master default protected
  • migrate_model_server
  • staging protected
  • 2024.10.01
  • 2024.06.03
  • 2024.04.19
  • 2024.03.01
11 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.013Dec1110976530Nov2928272625222120191815141211109432131Oct3028272625222015141372130Sep2624232013126315Aug14131298752131Jul2624221817161585432124Jun2010765330May22876326Apr1917151211109pip to manage glasbeyMerge branch 'dev_coord_from_filename' into 'staging'Improperly merged batch runner changes beforeMerge branch 'staging' of git.embl.de:rhodes/model_server into stagingMerge branch 'dev_extract_coords' into 'staging'Can now specify option to search subdirectories directly to batch runnerRevert "Option to parse coordinates from filename"Option to parse coordinates from filenameMerge branch 'dev_batch_runner_read_file' into 'staging'Separate out method to read each accessor from file, so that this can be overridden in subclasses if neededMerge branch 'bug_update_focus_zi_empty_roiset' into 'staging'Merge branch 'staging' into bug_update_focus_zi_empty_roisetExport products no longer throw exceptions when called on empty RoiSetChose to disallow create of empty patchstack; test asserts this will throw an exceptionMerge branch 'dev_mip_patch_mask' into 'staging'Add option to get MIP of patch maskGetting some patch masks with multiple labels and at last one with multiple colorsMerge branch 'dev_focus_patch_masks' into 'staging'Adjust RoiSet focus relative to 3d patch focusGetting a patch mask can optionally update patch focusexport_patch_masks now return pd.SeriesCan export both 2d and 3d patch masksCan export both 2d and 3d patch masksMerge branch 'issue_resume_batch' into 'staging'Implemented option to resume a batch job from previous filelistMerge branch 'dev_3dseg_bug' into 'staging'Corrected bug where 3d patch was modified in-place during rescalingRemoved min_sobel, which was there for debuggingFixed error with zero-length dataframe in 3d seg caseMerge branch 'dev_batch_seg' into 'staging'Rescale channels separately unless making an RGB imageCopy config.json and filelist.csv to output folderPropagate force_tif from run_exportsSplit out local and remot path roots, but successfully completed a test run on remoteMerge branch 'dev_batch_multiple_dirs' into 'staging'Deserialization does not solve deprojection a second time; a deprojected RoiSet is serialized as 3D. Tight patch mask format depends on dimensions of ROIs themselves, so 2d PNGs are possible in a 3D set if no ROI is thicker than 1Tests pass, caught bug where a deserialized RoiSet would become 3dNo longer copy and pass around dataframes when running patch exportsPatch exports are passed to a single parameter now, but still working out bugsApplied same optimization to binary mask computation, but this still his memory issue on large dataset