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Created with Raphaël 2.2.025Nov222120191815141211109432131Oct3028272625222015141372130Sep2624232013126315Aug14131298752131Jul2624221817161585432124Jun2010765330May22876326Apr1917151211109543229Mar2825Merge branch 'staging' into dev_batch_multiple_dirsMerge branch 'dev-cluster-build' into 'staging'Specified python version, needed to solve environment on clusterMerge remote-tracking branch 'origin/dev_batch_multiple_dirs' into dev_batch_multiple_dirsUpdated tests: smoothing is now more aggressive, lowered threshold of IOU for comparison; task endpoints updatedUpdated tests: smoothing is now more aggressive, lowered threshold of IOU for comparison; task endpoints updatedRepaired a couple tests failing because of changes to dtype propagation in .applyDefault smoothing to 0.5label_pixel_class returns bool againIntroduced post-smoothing threshold when rebinarizing floating-point gaussian smoothingWrite patches to subdirectories by their stack associationWrite copy of file list to output directorySome tests are still failing but able to start batch jobPatchStack is not lazySpecify YXZ data to image processingDefault assume that accessors are not lazy; add_accessor then overrides this if a lazy accessor is subsequently bound to this IDAccess [0, 1] arrays as masks, tooAdded lazy property that is used by sessions when solving dependenciesClient reports when tasks in "waiting" state are left behindRepaired uint8 overrun in intensity-weighted argmax, this improved results in TREC set dramaticallyOptional intensity threshold for weight deprojectionAdjusted threshold so that test passes, this must have changed with alternate deprojectionProgress exporting RoiSet products but deleting accessors accidentally takes out the wrong thingPass prefix information to RoiSet product exportsCorrected arithmetic error in deprojection, but this is triggering exceptions with patch dimensionsPass prefix to overlays mapDeleting all accessors doesn't delete those that are still registered as dependencies in unfinished tasksUpdated API tests to reflect addition of "READY" task statusInstance method to name accessor IDs that a given task depends onHooked up overlay map to export runner.to_8bit was causing problems when applied to an accessor that was already 8-btRemoved leftover assertion from test developmentAdded reader class method to PatchStack, used in testCan export patch stacks as single filesShortcut method to convert an accessor to 8-bitOption to MIP label identities overlay mapCan optionally write composite TIFComposite export works, addressed previous problem which was actually clipping relatedWorking example of RGB composite export but it shows overlapping objectsOverlay map exports as multichannel z-stack