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ALMF
SVLT
Graph
c729a07e73486abcdde344bd62208965721f3e28
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Branches
7
37-unnecessary-for-loop-in-rois-features
dev-nda-stream
dev-proj0024
dev_patch_viz
master
default
protected
migrate_model_server
staging
protected
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5
2025.03.01
2024.10.01
2024.06.03
2024.04.19
2024.03.01
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Created with Raphaël 2.2.0
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load method returns data array, init assigns it
Merge branch 'dev_task_queue' into 'staging'
Log task-related session events
Cleaned up TODOs, tests pass
Added method to support queue-based tasks execution
Renamed task-management class since it is technically not a queue
Test covers failure originating in task execution
Test covers task API
Pass pop parameter when writing accessors
Option to schedule pipeline as a task
Tests pass using task queue
Tasks runs, just need to hook up result with pipeline test
Implemented queue, basic endpoints, and first pipeline example. Did not yet test execution.
Merge branch 'staging' of git.embl.de:rhodes/model_server into staging
Merge branch 'staging' into 'master'
Merge branch 'release_2024.11.01' into 'staging'
Accidentally called channel picking twice
Merge branch 'staging' into 'master'
Instance dict to capture misc data with same key as pipeline trace accessors
Merge branch 'int_trec' into 'staging'
Removed aggregation method, instead can filter by other classification results
Int64 type was causing issues downstream in eval/query calls; Int16 is adequate
IntensityThresholdInstanceMaskSegmentationModel enforces a mono image but itself is not initiated with a channel
Method to test whether accessor can be used as a mask
Fixed handling of unset roi size filter
Accidentally called channel picking twice
Can filter ROI by minimum of height and width
Can filter ROI by diagonal dimension, too
Can also pass ndarray to PipelineTrace
Option to pass probability threshold to label_pixel_class method; model falls back on instance attribute if not supplied
Skip first item when appending traces by default
Can append stacks for tracking pipelines
PatchStack no longer loses slice information when doing channel separation
IlastikPixelClassifierModel can optionally rescale pxmap output to range of its input
Simplified RoiSetWithDerivedChannels, now simply appends all derived channels in series. Test confirms that multichannel derived accessor is used.
Merge remote-tracking branch 'origin/int_trec' into int_trec
Don't allow appending different data types
Filter objects before generating their binary masks
Filter objects before generating their binary masks
Added option to crop list representation of patch stack
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