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Created with Raphaël 2.2.025Mar222176429Feb282019157653226Jan259822Dec21201913Nov10763231Oct30272625222019181716141312111098529Sep2827262513127654131Aug302928242322Improve normalization when generating instance segmentation modelMerge branch 'patch_stack_one_channel' into 'staging'Correct error when trying to extract a single channel from a PatchStackMerge branch 'ilastik_px_predictions_to_instance_seg' into 'staging'Generate an InstanceSegmentationModel from an IlastikObjectClassifierFromPixelPredictionsModel given binarization parametersMerge branch 'ilastik_model_validation' into 'staging'Set default values for time, color, and z-axes in ilastik model validationMerge branch '4-events-are-not-logged-to-session-manifest' into 'staging'Merge branch '1-ilastik-models-do-not-validate-dimensionality-of-input-data' into 'staging'Removed manifest JSON from sessionReport out session logs on APIMoved session restart endpointLogged ilastik eventsRemoved JSON manifest file, logged summaries to logging service insteadChanged log entry formattingCleaned up testsMerge branch 'issue0017' into expose_session_logs_in_apiCleared up issues with Singleton behavior, largely confused by the fact this python logger itself is a Singleton that persists between testsMocked up session logging implementation using python log service; two tests are failing apparently due to Session singleton-related issuesValidate chroma and dimensionality of inputs to pixel classification modelTest of patch object classification now explicitly excludes single pixels that are labeled differentlyRemoved PatchStackObjectClassifier, merged this behavior into IlastikObjectClassifierFromSegmentationModelAdded import/export functionality to patch stacksTests that use random arrays now call a single function to ensure integer typeUpdate object classification test based on new test ilastik project fileRaise error if ilastik data not embedded in project file; but it appears that most test classifiers fail thisCatch when CZI is compressed via unsupported ZSTD formatMerge branch 'staging' into 'master'2024.03.012024.03.01Standardize that export record is a dict of pathlib.Path objectsrecord entry returned by object class map export is no longer a dictionary of paths, but rather one path for object mapRe-merged option to automatically MIP z-stacks sent to ilastik workflowRe-merged option to automatically MIP z-stacks sent to ilastik workflowReconciled IJ Jython client API endpointsReport out paths to some RoiSet export productsMapped dummy model for instance segmentation to API as well, for testing purposesSimilarly, API test cases now call GET through an internal methodAPI test cases now call PUT through an internal method with re-attempts built in; trying to eliminate lost connections during testing but some still happenSupport subclassing of TestServerBaseClass with different FastAPI application routeparameterize FastAPI app name, to be overridden by external caller if neededupdate mamba bat path