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ALMF
SVLT
Graph
d02ee357af270a5a9392d516c6118f0adc132693
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7
37-unnecessary-for-loop-in-rois-features
dev-nda-stream
dev-proj0024
dev_patch_viz
master
default
protected
migrate_model_server
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5
2025.03.01
2024.10.01
2024.06.03
2024.04.19
2024.03.01
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Created with Raphaël 2.2.0
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.to_8bit was causing problems when applied to an accessor that was already 8-bt
Removed leftover assertion from test development
Added reader class method to PatchStack, used in test
Can export patch stacks as single files
Shortcut method to convert an accessor to 8-bit
Option to MIP label identities overlay map
Can optionally write composite TIF
Composite export works, addressed previous problem which was actually clipping related
Working example of RGB composite export but it shows overlapping objects
Overlay map exports as multichannel z-stack
Incomplete implementation of overlay object identities map using glasbey palette
Incomplete implementation of overlay object identities map using glasbey palette
Intensity-weighted deprojection passes tests
Drafted intensity-weighted deprojection
.apply method casts result to same dtype as input accessor by default
Call writer that automatically creates directory
Stopped catching run task errors for now, this made debugging way too hard
Simplified input-output accessor mapping
Working on correcting routing of accessor IDs
Pipelines output more descriptive filenames with optional subdirectories
Batch runner names files with key that is relatable back to input stack, as well as task key
session should report next "ready" task, not "waiting"
Moved test location
Test of dependency checking passes
Pipeline runs without error, non-informative file names at end
Cast smooth result back to native dtype
Discrepancy in queueing task with params pydantic object or dict
Match output accessors with already queued task IDs
Expose method to lookup output accessor id by task id
No longer pop by default, tests reflect this
Direct test of binding accessor to a reserved ID
Reserved accessor knows its parent task_id
Discontinued embedding information about an accessor's place in trace, etc. in its ID; can add this as annotation label if needed
Pipelines separately reserve and binding accessor_ids; "add_accessor" method retains same functionality by calling these
Reserving accessor ID without accessor object, then binding after a task, is now possible
RoiSet needs two inputs, need to find way to resolve this in client
Removed unnecessary last step in pipeline
Pass write_all flag to individual run_task calls
Output time it takes to run each task
Added some endpoints so that clients have more control over running all tasks
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