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Created with Raphaël 2.2.031Oct3028272625222015141372130Sep2624232013126315Aug14131298752131Jul2624221817161585432124Jun2010765330May22876326Apr1917151211109543229Mar2825222176429Feb282019157653226Jan259822DecConvenience property to find smallest and larges patchesImplement labels property for object classification modelsCan create accessor that concatenates two channelsIlastik pixel classifier calls batch mode for performance reasons; removed handling of ilastik.applets.featureSelection.opFeatureSelection.FeatureSelectionConstraintError; unsure if this remains a riskRepaired get_list method of patch stackRoiSet method to create an aggregate column based on dataframe queryThreshold object classifier using PatchStacks passes testsAdded and covered PatchStack dataframe with summary statsAdded and covered PatchStack dataframe with summary statsImplemented patch stack data access functionsImplemented and tested intensity thresholdFixed references to moved modelMoved intensity gate model to RoiSet moduleTests all pass once test client passes model parameters over query, not body.Threshold models now take threshold relative to full data range; last two tests are hanging upApplied new model init parameterization to ilastikInstantiate models with keyword arguments now, no longer via "params" dictionary; although API still uses this name when passing Pydantic parameters models. API describes model via its info property now, which passes instance property, not its init arguments.Renamed some model classes; expanded scope of trivial object classification model to be functional base on intensity threshold, tooMerge remote-tracking branch 'origin/int_trec' into int_trecMoved ROIset pipeline testing away from ilastik moduleCan test ROI set pipelines without ilastik dependencyMapped permissive object classifier to API; test just covers that it loadsCan load and use simple binary threshold classifier instead of ilastik pixel classifierCan successfully access object map from accessor registerCan successfully access object map from accessor registerTrying to access RoiSet products over API, hitting an error in parsing params or somethingEndpoint to list ROIs, also listed in /statusWrote and tested API methods to get and write a single RoiSet in session registerPipeline workflow detects optional RoiSet return and maps to session roiset_idServer startup reports and returns top-level session data directoryImplemented RoiSet persistence at session levelMake requirements.yml match pyproject.toml, namely rolling back ilastik build and pinning protobuf, which causes issues in ilastik 1.4.1b15Removed unused derived channels paramsOption to copy file from test server's get_accessor methodTests passCan specify root session directory to startup script, uses env variable internallyMain startup server code is now in package, script only handles argument parsingAll tests passCleared TODO on model parametersCleared TODO on model parameters