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Created with Raphaël 2.2.031Oct3028272625222015141372130Sep2624232013126315Aug14131298752131Jul2624221817161585432124Jun2010765330May22876326Apr1917151211109543229Mar2825222176429Feb282019157653226Jan2598Accidentally called channel picking twiceCan filter ROI by minimum of height and widthCan filter ROI by diagonal dimension, tooCan also pass ndarray to PipelineTraceOption to pass probability threshold to label_pixel_class method; model falls back on instance attribute if not suppliedSkip first item when appending traces by defaultCan append stacks for tracking pipelinesPatchStack no longer loses slice information when doing channel separationIlastikPixelClassifierModel can optionally rescale pxmap output to range of its inputSimplified RoiSetWithDerivedChannels, now simply appends all derived channels in series. Test confirms that multichannel derived accessor is used.Merge remote-tracking branch 'origin/int_trec' into int_trecDon't allow appending different data typesFilter objects before generating their binary masksFilter objects before generating their binary masksAdded option to crop list representation of patch stackConvenience property to find smallest and larges patchesImplement labels property for object classification modelsCan create accessor that concatenates two channelsIlastik pixel classifier calls batch mode for performance reasons; removed handling of ilastik.applets.featureSelection.opFeatureSelection.FeatureSelectionConstraintError; unsure if this remains a riskRepaired get_list method of patch stackRoiSet method to create an aggregate column based on dataframe queryThreshold object classifier using PatchStacks passes testsAdded and covered PatchStack dataframe with summary statsAdded and covered PatchStack dataframe with summary statsImplemented patch stack data access functionsImplemented and tested intensity thresholdFixed references to moved modelMoved intensity gate model to RoiSet moduleTests all pass once test client passes model parameters over query, not body.Threshold models now take threshold relative to full data range; last two tests are hanging upApplied new model init parameterization to ilastikInstantiate models with keyword arguments now, no longer via "params" dictionary; although API still uses this name when passing Pydantic parameters models. API describes model via its info property now, which passes instance property, not its init arguments.Renamed some model classes; expanded scope of trivial object classification model to be functional base on intensity threshold, tooMerge remote-tracking branch 'origin/int_trec' into int_trecMoved ROIset pipeline testing away from ilastik moduleCan test ROI set pipelines without ilastik dependencyMapped permissive object classifier to API; test just covers that it loadsCan load and use simple binary threshold classifier instead of ilastik pixel classifierCan successfully access object map from accessor registerCan successfully access object map from accessor register