Skip to content
Snippets Groups Projects
Commit 14b1271a authored by cyril.cros's avatar cyril.cros
Browse files

restructuring to see what happens

parent 33902c80
1 merge request!1Check docker
Pipeline #58328 passed
......@@ -2,16 +2,15 @@
FROM quay.io/biocontainers/jbrowse2:2.10.2--h5284365_0 as jbrowse_builder
WORKDIR /app
RUN jbrowse create annelids
WORKDIR /app/annelids
COPY jbrowse_script.sh .
RUN ./jbrowse_script.sh
RUN rm -rf ./node_modules
RUN ls -alh
# Stage 2: Load into nginx
FROM nginx:alpine
WORKDIR /usr/share/nginx/html
RUN rm -rf ./*
COPY --from=jbrowse_builder /app/annelids/ .
COPY --from=jbrowse_builder /app/ .
ENTRYPOINT ["nginx", "-g", "daemon off;"]
#!/bin/bash -eux
# Platy only for now
jbrowse create annelids
cd annelids
jbrowse add-assembly https://s3.embl.de/annelids/pdumv021/pdumv021_genome.fa.gz --name pdumv021
jbrowse add-track https://s3.embl.de/annelids/pdumv021/pdumv021.sorted.gff.gz -d "Kevin pdumv021 GTF file" -n "Genes models" --category "Annotations"
jbrowse add-track https://s3.embl.de/annelids/pdumv021/transdecoder.gff.gz -d "Kevin runs transdecoder" -n "Transdecoder results" --category "Annotations"
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment