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Commit 2a045e72 authored by cyril.cros's avatar cyril.cros
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Why is the config file empty? x3

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...@@ -6,9 +6,9 @@ FROM quay.io/biocontainers/jbrowse2:2.15.3--hbbc3ce4_0 as jbrowse_builder ...@@ -6,9 +6,9 @@ FROM quay.io/biocontainers/jbrowse2:2.15.3--hbbc3ce4_0 as jbrowse_builder
WORKDIR /app/annelids WORKDIR /app/annelids
COPY jbrowse_script_base.sh default_session.json tracks.json ./ COPY jbrowse_script_base.sh default_session.json tracks.json ./
COPY --from=jq /jq ./ COPY --from=jq /jq ./
RUN ./jbrowse_script_base.sh \ RUN ./jbrowse_script_base.sh
&& ls \ RUN ls \
| ./jq --rawfile base default_session.json '.defaultSession = $base' \ && ./jq --rawfile base default_session.json '.defaultSession = $base' \
| ./jq --rawfile base tracks.json '. += $base' > config.json \ | ./jq --rawfile base tracks.json '. += $base' > config.json \
&& rm -rf node_modules jq jbrowse_script_base.sh default_session.json tracks.json && rm -rf node_modules jq jbrowse_script_base.sh default_session.json tracks.json
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