Basic Nginx with working CI/CD

.gitignore

+tmp/*
\ No newline at end of file

.gitlab-ci.yml

+---
+stages:
+  - deploy_to_cluster
+  - clean_up_on_failure
+cluster_access_test:
+  image: dtzar/helm-kubectl:3.8.2
+  stage: deploy_to_cluster
+  script:
+    - cd deployment
+    - echo $KUBECONFIG | base64 -d > /tmp/kubeconf
+    - export KUBECONFIG=/tmp/kubeconf
+    - kubectl config current-context
+kustomize_build_apply:
+  image: dtzar/helm-kubectl:3.8.2
+  stage: deploy_to_cluster
+  script:
+    - echo $KUBECONFIG | base64 -d > /tmp/kubeconf
+    - export KUBECONFIG=/tmp/kubeconf
+    - kubectl apply -k deployment
+    - kubectl -n $NS wait --for=condition=available --timeout=60s deploy/jbrowse2
+  dependencies:
+    - cluster_access_test
+clean_up_k8s_deployment:
+  image: dtzar/helm-kubectl:3.8.2
+  stage: clean_up_on_failure
+  when: on_failure
+  script:
+    - echo 'Failed job, deleting resources'
+    - echo $KUBECONFIG | base64 -d > /tmp/kubeconf
+    - export KUBECONFIG=/tmp/kubeconf
+    - kubectl delete -k deployment 
\ No newline at end of file

deployment/jbrowse2-dep.yaml

+---
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: jbrowse2
+  namespace: jbrowse2-platy
+  labels:
+    name: jbrowse2
+spec:
+  replicas: 1
+  selector:
+    matchLabels:
+      app: jbrowse2
+  template:
+    metadata:
+      labels:
+        app: jbrowse2
+    spec:
+      containers:
+        - name: jbrowse2
+          image: nginx:alpine
+          imagePullPolicy: Always
+          resources:
+            requests:
+              memory: 1024Mi
+              cpu: 1024m
+            limits:
+              memory: 2048Mi
+              cpu: 2048m
+          ports:
+            - name: http
+              containerPort: 80
+              protocol: TCP
+---
+apiVersion: v1
+kind: Service
+metadata:
+  name: jbrowse2
+  namespace: jbrowse2-platy
+spec:
+  selector:
+    app: jbrowse2
+  ports:
+    - name: http
+      protocol: TCP
+      port: 80
+      targetPort: http
+---
+apiVersion: networking.k8s.io/v1
+kind: Ingress
+metadata:
+  name: jbrowse2
+  namespace: jbrowse2-platy
+  annotations:
+    traefik.ingress.kubernetes.io/router.tls.certresolver: sectigo
+spec:
+  ingressClassName: external-users
+  rules:
+    - host: genomes.arendt.embl.de
+      http:
+        paths:
+          - path: /
+            pathType: Prefix
+            backend:
+              service:
+                name: jbrowse2
+                port:
+                  name: http
+  tls:
+    - hosts:
+      - genomes.arendt.embl.de
\ No newline at end of file

deployment/kustomization.yaml

+apiVersion: kustomize.config.k8s.io/v1beta1
+kind: Kustomization
+resources:
+- jbrowse2-dep.yaml
+labels:
+- includeSelectors: true
+  pairs:
+    app: jbrowse2