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Commit 94464948 authored by Cyril Christophe Daniel Robert Cros's avatar Cyril Christophe Daniel Robert Cros
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Editing the tracks details

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...@@ -8,14 +8,14 @@ jbrowse add-track https://s3.embl.de/annelids/pdumv021/Annotation/pdumv021_Annot ...@@ -8,14 +8,14 @@ jbrowse add-track https://s3.embl.de/annelids/pdumv021/Annotation/pdumv021_Annot
jbrowse add-track https://s3.embl.de/annelids/pdumv021/Annotation/pdumv021_EMAPPER.emapper.gff.gz -a "pdumv021" -d "Kevin's GFF file from EMAPPER" -n "EMAPPER models" --category "Annotation" --trackId "emapper" --indexFile https://s3.embl.de/annelids/pdumv021/Annotation/pdumv021_EMAPPER.emapper.gff.gz.tbi jbrowse add-track https://s3.embl.de/annelids/pdumv021/Annotation/pdumv021_EMAPPER.emapper.gff.gz -a "pdumv021" -d "Kevin's GFF file from EMAPPER" -n "EMAPPER models" --category "Annotation" --trackId "emapper" --indexFile https://s3.embl.de/annelids/pdumv021/Annotation/pdumv021_EMAPPER.emapper.gff.gz.tbi
jbrowse add-track https://s3.embl.de/annelids/pmassv1_masked/Annotation/pmassv1_EMAPPER.gff.gz -a "pmassv1_masked" -d "Kevin's GFF file from EMAPPER" -n "EMAPPER models" --category "Annotation" --trackId "emapper-pmass" --indexFile https://s3.embl.de/annelids/pmassv1_masked/Annotation/pmassv1_EMAPPER.gff.gz.tbi jbrowse add-track https://s3.embl.de/annelids/pmassv1_masked/Annotation/pmassv1_EMAPPER.gff.gz -a "pmassv1_masked" -d "Kevin's GFF file from EMAPPER" -n "EMAPPER models" --category "Annotation" --trackId "emapper-pmass" --indexFile https://s3.embl.de/annelids/pmassv1_masked/Annotation/pmassv1_EMAPPER.gff.gz.tbi
jbrowse add-track https://s3.embl.de/annelids/pmassv1_masked/Annotation/pmassv1_masked_Annotation_annotation.gff.gz -a "pmassv1_masked" -d "Kevin's GTF file" -n "Gene models" --category "Annotation" --trackId "annotation-pmass" --indexFile https://s3.embl.de/annelids/pmassv1_masked/Annotation/pmassv1_masked_Annotation_annotation.gff.gz.tbi jbrowse add-track https://s3.embl.de/annelids/pmassv1_masked/Annotation/pmassv1_masked_Annotation_annotation.gff.gz -a "pmassv1_masked" -d "Kevin's GTF file" -n "Gene models" --category "Annotation" --trackId "annotation-pmass" --indexFile https://s3.embl.de/annelids/pmassv1_masked/Annotation/pmassv1_masked_Annotation_annotation.gff.gz.tbi
jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/2.final.bam -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 2" --category "ATACseq" --trackId "library_bam_2" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/2.final.bam.bai jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/2.final.bam -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 2 BAM" --category "ATACseq" --trackId "library_bam_2" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/2.final.bam.bai
jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/2.final.bigwig -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 2" --category "ATACseq" --trackId "library_bigwig_2" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/ jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/2.final.bigwig -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 2 BigWig" --category "ATACseq" --trackId "library_bigwig_2" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/
jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/3.final.bam -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 3" --category "ATACseq" --trackId "library_bam_3" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/3.final.bam.bai jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/3.final.bam -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 3 BAM" --category "ATACseq" --trackId "library_bam_3" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/3.final.bam.bai
jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/3.final.bigwig -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 3" --category "ATACseq" --trackId "library_bigwig_3" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/ jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/3.final.bigwig -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 3 BigWig" --category "ATACseq" --trackId "library_bigwig_3" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/
jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/4.final.bam -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 4" --category "ATACseq" --trackId "library_bam_4" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/4.final.bam.bai jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/4.final.bam -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 4 BAM" --category "ATACseq" --trackId "library_bam_4" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/4.final.bam.bai
jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/4.final.bigwig -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 4" --category "ATACseq" --trackId "library_bigwig_4" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/ jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/4.final.bigwig -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 4 BigWig" --category "ATACseq" --trackId "library_bigwig_4" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/
jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/5.final.bam -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 5" --category "ATACseq" --trackId "library_bam_5" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/5.final.bam.bai jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/5.final.bam -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 5 BAM" --category "ATACseq" --trackId "library_bam_5" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/5.final.bam.bai
jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/5.final.bigwig -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 5" --category "ATACseq" --trackId "library_bigwig_5" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/ jbrowse add-track https://s3.embl.de/annelids/pdumv021/ATACseq/5.final.bigwig -a "pdumv021" -d "Lara's Snakemake outputs" -n "Library 5 BigWig" --category "ATACseq" --trackId "library_bigwig_5" --indexFile https://s3.embl.de/annelids/pdumv021/ATACseq/
jbrowse add-track https://s3.embl.de/annelids/pdumv021/MASseq/collapsed.gff.gz -a "pdumv021" -d "MASseq outputs from running isoseq collapse against the Pdum genome" -n "SN073 MASseq isoforms from the 15ng prep" --category "MASseq" --trackId "SN073_15ng_collapsed" --indexFile https://s3.embl.de/annelids/pdumv021/MASseq/collapsed.gff.gz.tbi jbrowse add-track https://s3.embl.de/annelids/pdumv021/MASseq/collapsed.gff.gz -a "pdumv021" -d "MASseq outputs from running isoseq collapse against the Pdum genome" -n "SN073 MASseq isoforms from the 15ng prep" --category "MASseq" --trackId "SN073_15ng_collapsed" --indexFile https://s3.embl.de/annelids/pdumv021/MASseq/collapsed.gff.gz.tbi
jbrowse add-track https://s3.embl.de/annelids/pdumv021/MASseq/collapsed.gff.gz -a "pdumv021" -d "MASseq outputs from running isoseq collapse against the Pdum genome" -n "SN073 MASseq isoforms" --category "MASseq" --trackId "SN073_60ng_collapsed" --indexFile https://s3.embl.de/annelids/pdumv021/MASseq/collapsed.gff.gz.tbi jbrowse add-track https://s3.embl.de/annelids/pdumv021/MASseq/collapsed.gff.gz -a "pdumv021" -d "MASseq outputs from running isoseq collapse against the Pdum genome" -n "SN073 MASseq isoforms" --category "MASseq" --trackId "SN073_60ng_collapsed" --indexFile https://s3.embl.de/annelids/pdumv021/MASseq/collapsed.gff.gz.tbi
jbrowse add-track https://s3.embl.de/annelids/pdumv021/Variants/pdumv021_Variants_SN035_vcf.vcf.gz -a "pdumv021" -d "Tobi's variants" -n "SN035" --category "Variants" --trackId "SN035_vcf" --indexFile https://s3.embl.de/annelids/pdumv021/Variants/pdumv021_Variants_SN035_vcf.vcf.gz.tbi jbrowse add-track https://s3.embl.de/annelids/pdumv021/Variants/pdumv021_Variants_SN035_vcf.vcf.gz -a "pdumv021" -d "Tobi's variants" -n "SN035" --category "Variants" --trackId "SN035_vcf" --indexFile https://s3.embl.de/annelids/pdumv021/Variants/pdumv021_Variants_SN035_vcf.vcf.gz.tbi
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