Just added processing for miRNA in platy

.gitignore

@@ -2,4 +2,7 @@ tmp/*
 */.nextflow.log*
 */.nextflow
 .nextflow.log*
-.nextflow
\ No newline at end of file
+.nextflow
+supplementary_resources/*/*.gff
+supplementary_resources/*/*.gff.gz
+supplementary_resources/*/*.gff.gz.tbi
\ No newline at end of file

supplementary_resources/pdumv21/convert_to_gff.sh

+#!/bin/bash
+FILE='./Supp_miRNA_Annotation_Table.xlsx - miRNA_annotated.csv'
+OUT_FILE='./miRNA.gff'
+echo "##gff-version 3" > $OUT_FILE
+tail -n +2 "$FILE" | awk -F ',' '!($5 == "")' | cut -d',' -f 1,5,9 | sed -E -e 's/(:|\.\.)/,/g' | \
+ awk 'BEGIN {FS=","; OFS="\t"} {print $2, MirDeep2, miRNA, $3, $4, $6, $5, ".", "gene_name=\""$1"\""}' >> $OUT_FILE