ssh <username>@login.cluster.embl.de

git clone https://git.embl.de/msmith/embl_hpc.git

hostname

srun hostname

cd $HOME/embl_hpc/exercises
./hpc_example -t 10 -m 100

srun ./hpc_example -t 10 -m 100

srun --­­reservation=training ./hpc_example -­t 10 -­m 100

sbatch ­­--reservation=training ./batch_job.sh

sbatch --output=output.txt --reservation=training ./batch_job.sh

sbatch --output=output.txt --reservation=training ./batch_job.sh 20 ???

scontrol show partition

sbatch --mem=8200 --reservation=training ./batch_job.sh 30 8000

sbatch --mem=100G --reservation=training ./batch_job.sh 30 5000

scancel <jobID>
scancel -u <username>

sbatch ­­--time=00­00:00:30  \
    ­­--reservation=training \
    batch_job.sh 60 500

seff <jobID>

sbatch ­­--mail­user=<first.last>@embl.de \
    ­­--reservation=training \
    ./batch_job.sh 20 500

module avail
module spider samtools
module load BWA

nano bwa/bwa_batch.sh
sbatch ­­­­--reservation=training bwa/bwa_batch.sh

srun --pty bash

srun --mem=250 --pty bash

sbatch batch_jobs.sh

jid=$(sbatch --parsable batch_job.sh)

sbatch --dependency=afterok:$jid batch_job.sh