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Bio-IT Workshops
image-analysis-with-python
Commits
aab03a71
Commit
aab03a71
authored
5 years ago
by
Dominik Kutra
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add debug output, conda init
parent
d280af52
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add-ci
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aab03a71
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@@ -6,12 +6,19 @@ variables:
before_script
:
-
conda update -y -c conda-forge -c defaults conda
-
conda init bash
-
source /root/.bashrc
-
conda env create -n ${TEST_ENV_NAME} --file environment.yml
-
conda install -c conda-forge -c defaults -n ${TEST_ENV_NAME} jupyter
-
conda activate ${TEST_ENV_NAME}
-
conda list
-
which python
test
:
stage
:
test
script
:
-
conda activate ${TEST_ENV_NAME}
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which python
-
conda list
-
echo ${PATH}
-
jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute image-analysis-session/*.ipynb
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