- A full 500 page book about the Linux commandline for free(!): `LinuxCommand.org <http://linuxcommand.org/>`_ [#l1]_
- Another nice introduction: `"A beginner's guide to UNIX/Linux" <http://www.mn.uio.no/astro/english/services/it/help/basic-services/linux/guide.html>`_ [#l2]_
- The "*commandline starter*" chapter of an O'Reilly book: `Learning Debian GNU/Linux - Issuing Linux Commands <http://oreilly.com/openbook/debian/book/ch04_01.html>`_ [#l3]_
- The "*commandline starter*" chapter of an O'Reilly book: `Learning Debian GNU/Linux - Issuing Linux Commands <http://www.oreilly.com/openbook/debian/book/ch04_01.html>`_ [#l3]_
- A nice introduction to Linux/UNIX file permissions: `"chmod Tutorial" <http://www.catcode.com/teachmod/>`_ [#l4]_
- `BioPieces <http://code.google.com/p/biopieces>`_ [#l9]_ are a collection of bioinformatics tools that can be pieced together in a very easy and flexible manner to perform both simple and complex tasks.
.. - For the technically interested: `Linux Filesystem Hierarchy Standard <http://www.pathname.com/fhs/>`_ [#l6]_ and `Linux Standard Base <http://www.linuxfoundation.org/collaborate/workgroups/lsb>`_ [#l7]_
Command Line Mystery Game
^^^^^^^^^^^^^^^^^^^^^^^^^
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@@ -37,8 +39,8 @@ To play the game, get the files from github and read the instructions:
cat instructions
Real printed paper books
^^^^^^^^^^^^^^^^^^^^^^^^
Recommended Reading: Real printed paper books
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Dietz, M., "*Praxiskurs Unix-Shell*", O'Reilly (highly recommended!, German language only)
- Herold, H., "*awk & sed*", Addison-Wesley
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@@ -94,17 +96,17 @@ of the BioInformatics Center (BIC), National University of Singapore (NUS).