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validate_dependencies.R 1.4 KiB
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Renato Alves's avatar
Add instructions and validate that all libraries loaded correctly
Renato Alves committed
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source("~/.Rprofile")

suppressWarnings(suppressMessages(library("AnnotationDbi")))
suppressWarnings(suppressMessages(library("DOSE")))
suppressWarnings(suppressMessages(library("RJSONIO")))
suppressWarnings(suppressMessages(library("ReactomePA")))
suppressWarnings(suppressMessages(library("STRINGdb")))
suppressWarnings(suppressMessages(library("biomaRt")))
suppressWarnings(suppressMessages(library("clusterProfiler")))
suppressWarnings(suppressMessages(library("devtools")))
suppressWarnings(suppressMessages(library("doseplot")))
suppressWarnings(suppressMessages(library("dplyr")))
suppressWarnings(suppressMessages(library("enrichplot")))
suppressWarnings(suppressMessages(library("ggupset")))
suppressWarnings(suppressMessages(library("httr")))
suppressWarnings(suppressMessages(library("igraph")))
suppressWarnings(suppressMessages(library("jsonlite")))
suppressWarnings(suppressMessages(library("org.Hs.eg.db")))
suppressWarnings(suppressMessages(library("org.Mm.eg.db")))
suppressWarnings(suppressMessages(library("pathfindR")))
suppressWarnings(suppressMessages(library("pathview")))
suppressWarnings(suppressMessages(library("plyr")))
suppressWarnings(suppressMessages(library("reshape")))
suppressWarnings(suppressMessages(library("reshape2")))
suppressWarnings(suppressMessages(library("tidyverse")))
suppressWarnings(suppressMessages(library("topGO")))

cat("If you didn't see any error message, you are good to go\n")