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Day_2/Exercises_and_Tutorials/0.Tutorial/network_0.5_id_list.txt

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Day_2/Exercises_and_Tutorials/0.Tutorial/network_0.5_id_list_ensembl.txt

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+Ensembl:ENSG00000173209
+Ensembl:ENSG00000173692
+Ensembl:ENSG00000174371
+Ensembl:ENSG00000198445
+Ensembl:ENSG00000103051
+Ensembl:ENSG00000247077
+Ensembl:ENSG00000136011
+Ensembl:ENSG00000136933
+Ensembl:ENSG00000109113
+Ensembl:ENSG00000109519
+Ensembl:ENSG00000129071
+Ensembl:ENSG00000141510
+Ensembl:ENSG00000164284
+Ensembl:ENSG00000165392
+Ensembl:ENSG00000167196
+Ensembl:ENSG00000176102
+Ensembl:ENSG00000196850
+Ensembl:ENSG00000197299
+Ensembl:ENSG00000198901
+Ensembl:ENSG00000170312
+Ensembl:ENSG00000205726
+Ensembl:ENSG00000143315
+Ensembl:ENSG00000155621
+Ensembl:ENSG00000082458
+Ensembl:ENSG00000122861
+Ensembl:ENSG00000123384
+Ensembl:ENSG00000175445
+Ensembl:ENSG00000175646
+Ensembl:ENSG00000126262
+Ensembl:ENSG00000165471
+Ensembl:ENSG00000133112
+Ensembl:ENSG00000166575
+Ensembl:ENSG00000173011
+Ensembl:ENSG00000179218
+Ensembl:ENSG00000184056
+Ensembl:ENSG00000197958
+Ensembl:ENSG00000269058
+Ensembl:ENSG00000276234
+Ensembl:ENSG00000104884
+Ensembl:ENSG00000121988
+Ensembl:ENSG00000126602
+Ensembl:ENSG00000130726
+Ensembl:ENSG00000138430
+Ensembl:ENSG00000163161
+Ensembl:ENSG00000166598
+Ensembl:ENSG00000175595
+Ensembl:ENSG00000182473
+Ensembl:ENSG00000112335
+Ensembl:ENSG00000112062
+Ensembl:ENSG00000125740
+Ensembl:ENSG00000175387
+Ensembl:ENSG00000177606
+Ensembl:ENSG00000184708
+Ensembl:ENSG00000103657
+Ensembl:ENSG00000105851
+Ensembl:ENSG00000116473
+Ensembl:ENSG00000139842
+Ensembl:ENSG00000143622
+Ensembl:ENSG00000144566
+Ensembl:ENSG00000145604
+Ensembl:ENSG00000159069
+Ensembl:ENSG00000165699
+Ensembl:ENSG00000166851
+Ensembl:ENSG00000167986
+Ensembl:ENSG00000187608
+Ensembl:ENSG00000187840
+Ensembl:ENSG00000198793
+Ensembl:ENSG00000108669
+Ensembl:ENSG00000185344
+Ensembl:ENSG00000119689
+Ensembl:ENSG00000136271
+Ensembl:ENSG00000169764
+Ensembl:ENSG00000115942
+Ensembl:ENSG00000179632
+Ensembl:ENSG00000147614
+Ensembl:ENSG00000159720
+Ensembl:ENSG00000173638
+Ensembl:ENSG00000115233
+Ensembl:ENSG00000125676
+Ensembl:ENSG00000147416
+Ensembl:ENSG00000176974
+Ensembl:ENSG00000182199
+Ensembl:ENSG00000183207
+Ensembl:ENSG00000278535
+Ensembl:ENSG00000171453
+Ensembl:ENSG00000118640
+Ensembl:ENSG00000124333
+Ensembl:ENSG00000116830
+Ensembl:ENSG00000175054
+Ensembl:ENSG00000177302
+Ensembl:ENSG00000187790
+Ensembl:ENSG00000253729
+Ensembl:ENSG00000120438
+Ensembl:ENSG00000135624
+Ensembl:ENSG00000146701
+Ensembl:ENSG00000150753
+Ensembl:ENSG00000163468
+Ensembl:ENSG00000166226
+Ensembl:ENSG00000169679
+Ensembl:ENSG00000213347
+Ensembl:ENSG00000120586
+Ensembl:ENSG00000156958
+Ensembl:ENSG00000168906
+Ensembl:ENSG00000148926
+Ensembl:ENSG00000164619
+Ensembl:ENSG00000204531
+Ensembl:ENSG00000163485
+Ensembl:ENSG00000172732
+Ensembl:ENSG00000241258
+Ensembl:ENSG00000138071
+Ensembl:ENSG00000138346
+Ensembl:ENSG00000141367
+Ensembl:ENSG00000148225
+Ensembl:ENSG00000154767
+Ensembl:ENSG00000155959
+Ensembl:ENSG00000170950
+Ensembl:ENSG00000171865
+Ensembl:ENSG00000175792
+Ensembl:ENSG00000196236
+Ensembl:ENSG00000204628
+Ensembl:ENSG00000255767
+Ensembl:ENSG00000132781
+Ensembl:ENSG00000133460
+Ensembl:ENSG00000134899
+Ensembl:ENSG00000135446
+Ensembl:ENSG00000135679
+Ensembl:ENSG00000136856
+Ensembl:ENSG00000140398
+Ensembl:ENSG00000140451
+Ensembl:ENSG00000142583
+Ensembl:ENSG00000143384
+Ensembl:ENSG00000143476
+Ensembl:ENSG00000144554
+Ensembl:ENSG00000145649
+Ensembl:ENSG00000146411
+Ensembl:ENSG00000146414
+Ensembl:ENSG00000147889
+Ensembl:ENSG00000151229
+Ensembl:ENSG00000153147
+Ensembl:ENSG00000153487
+Ensembl:ENSG00000157703
+Ensembl:ENSG00000160200
+Ensembl:ENSG00000160326
+Ensembl:ENSG00000163393
+Ensembl:ENSG00000163581
+Ensembl:ENSG00000166803
+Ensembl:ENSG00000167513
+Ensembl:ENSG00000169188
+Ensembl:ENSG00000170734
+Ensembl:ENSG00000173262
+Ensembl:ENSG00000177889
+Ensembl:ENSG00000178295
+Ensembl:ENSG00000181163
+Ensembl:ENSG00000181856
+Ensembl:ENSG00000197241
+Ensembl:ENSG00000197496
+Ensembl:ENSG00000273604
+Ensembl:ENSG00000274276
+Ensembl:ENSG00000134365
+Ensembl:ENSG00000150337
+Ensembl:ENSG00000160712
+Ensembl:ENSG00000228321
+Ensembl:ENSG00000155827
+Ensembl:ENSG00000149532
+Ensembl:ENSG00000173207
+Ensembl:ENSG00000198242
+Ensembl:ENSG00000168509
+Ensembl:ENSG00000159479
+Ensembl:ENSG00000231135
+Ensembl:ENSG00000214960
+Ensembl:ENSG00000163682
+Ensembl:ENSG00000163947
+Ensembl:ENSG00000165629
+Ensembl:ENSG00000173848
+Ensembl:ENSG00000196497
+Ensembl:ENSG00000257315
+Ensembl:ENSG00000164287
+Ensembl:ENSG00000164733
+Ensembl:ENSG00000166974
+Ensembl:ENSG00000168291
+Ensembl:ENSG00000177000
+Ensembl:ENSG00000182521
+Ensembl:ENSG00000185813
+Ensembl:ENSG00000242247
+Ensembl:ENSG00000259371
+Ensembl:ENSG00000188779
+Ensembl:ENSG00000174125
\ No newline at end of file

Day_2/Exercises_and_Tutorials/0.Tutorial/network_0.5_id_list_symbols.txt

+CDK2
+DNAJA3
+TOP3B
+THOC2
+RNF40
+FOLR1
+SLC22A2
+RFC1
+EIF4ENIF1
+PICK1
+MAPK1
+VAMP7
+PCYT2
+GLG1
+HSP90AA1
+XRCC1
+MUS81
+SORL1
+CDK1
+MAP3K7
+CDH1
+FBXO5
+DOT1L
+ERCC2
+DNAJC3
+PIK3CG
+PGM1
+DOHH
+KIF22
+SPECC1L
+GIPC1
+TBP
+BUB1
+RAD51
+TTF2
+CCT5
+NUP155
+BRCA2
+MAD1L1
+FOXH1
+REST
+APMAP
+TBPL2
+LRP1
+RBX1
+CPSF7
+HERC1
+HOXD13
+PES1
+PGAM5
+CUL4A
+PDLIM7
+RNASEH1
+ZBTB24
+SRCAP
+RAD17
+EMC7
+PHF21A
+HMGA1
+BAZ2A
+DLAT
+CTSD
+BMP5
+CALR
+NCAPD3
+RPA2
+ASH1L
+IL6R
+ECHS1
+PGK1
+PRDX5
+WDR31
+H0YFU0_HUMAN
+UGP2
+MAPK14
+MED8
+RNF7
+POLD2
+VCP
+IFT52
+BMP4
+GLYR1
+IGF2R
+BMP7
+ISOC2
+RAE1
+UTP20
+PIK3CB
+POLH
+HSP90AB1
+WRN
+SLC2A4
+SYP
+FCN1
+DKK3
+HFE
+CPS1
+STAB2
+GART
+HSP90B1
+APLF
+OLA1
+TLR2
+LEF1
+SYF2
+MTHFR
+RPS8
+POLD3
+UBE2C
+MLL3
+GREM2
+KCTD10
+CCT2
+GRPEL2
+ANAPC10
+CDC20B
+CCT4
+DNA2
+FCGR1A
+CDC26
+TGFB1
+RGN
+NCAPG
+FZR1
+ATR
+SLC11A2
+CYTH2
+TP53
+PIAS1
+EEA1
+LBP
+TRIM28
+WDFY1
+DDX56
+TMEM135
+CALCRL
+PGK2
+BMPR1B
+SCARF1
+WDFY2
+ARFGAP3
+MSH2
+USF2
+SMC1B
+HAMP
+OBFC1
+ENG
+SMAD4
+HFE2
+TBC1D22A
+MBL2
+ZFYVE16
+LRP3
+VAMP8
+DNAJC13
+TFRC
+ANAPC2
+CCR2
+RAB7A
+FFAR2
+MAF1
+MLL4_HUMAN
+CHTF18
+USP8
+ERCC3
+PSMD14
+ACVRL1
+SRSF6
+MAP2K7
+BLM
+CRCP
+SMAD2
+POLA2
+LIG1
+CDT1
+SLC30A4
+TSC1
+SLC22A15
+PIF1
+MAT1A
+RPA4
+SLC2A13
+RNF20
+FBXW5
+CSTF3
+ATP5B
+BOD1L1
+DDB1
+PSMC4
+ACVR1
+ANAPC11
+VBP1
+TOP2A
+ERCC1
+TOP3A
+DLG1
+RPL23A
+POLD4
+SNX1
+TSC2
+LRP1B
+GPI
+MAD2L1
+SKOR1
+MALSU1
+VPS33B
+SRSF4
+RAP1A
+RIT1
+TLR3
+SYNJ1
+F2RL2
+HDAC1
+SETBP1
+ERCC4
+SLC2A7
+SMURF2
+DVL1
+TTI2
+BRCA1
+ADORA1
+UBE2N
+CDC27
+XPC
+SLC2A10
+TFR2
+BMPR1A
+COG4
+EXO1
+ANAPC4
+AP1G1
+SIRT1
+RAD23B
+GADD45G
+ACTL8
+ATP5A1
+TLR1
+AHCTF1
+GALK2
+IPO4
+MTOR
+ARFGAP2
+PCNA
+TCF3
+C9orf85
+CPSF6
+CCT3
+NSF
+MAPRE2
+SLC2A2
+ZRANB3
+OTC
+ACVR2A
+MSH6
+SLC2A1
+FANCM
+PLK1
+CDC20
+CHRDL1
+CORO1C
+TOP2B
+RAD52
+LRP2
+LPL
+PAPD7
+CCT8L2
+NCAPG2
+HLTF
+SLC2A14
+RFC2
+SSBP1
+SKI
+UBE2D1
+NEIL1
+CLTC
+PLAU
+CLPB
+GNB2L1
+ZBED6
+MAT2A
+SHMT2
+ATP6V0A2
+SKP2
+MAPRE3
+PMS1
+ATP6V1B1
+CLTCL1
+DLG3
+MUTYH
+XPNPEP3
+ANAPC1
+RUVBL1
+ATP5C1
+TADA2B
+BUB1B
+SVOPL
+SERPINE1
+HGS
+ACTR2
+CAD
+TCP1
+PNN
+APEX1
+MAP2K3
+ALDH18A1
+SLC2A5
+PIGM
+ITSN1
+RPL9
+MDH2
+DLST
+MLH3
+JUN
+MXD3
+ADORA2A
+SMAD3
+GRPEL1
+KPNB1
+CYTH1
+AP1S1
+MRC1
+RPLP0
+GDF9
+MSH4
+CKS2
+FSTL1
+APC
+GAPDH
+VPS35
+ERBB2IP
+NCAPD2
+PGM5
+MRPS33
+ISPD
+GALK1
+ING1
+RAMP2
+AADAT
+SMAD9
+PSMC1
+UBE2D3
+PMS2
+PRM1
+SHMT1
+NCAPH2
+IFNG
+FH
+ANAPC5
+FANCD2
+RPA3
+HOXA13
+GREM1
+KIAA0101
+GZMA
+EIF4EBP1
+AHSA2
+AMPH
+SMARCA5
+STK11
+N4BP2
+PSMD1
+TOR1A
+BMPER
+TPR
+ANAPC13
+BUB3
+CDC23
+SMC2
+SLC2A9
+VEGFA
+CTSB
+RAB5A
+BAMBI
+DTL
+APEX2
+PDS5B
+ADM
+POLD1
+WDR76
+CKS1B
+CRP
+SMURF1
+SFTPD
+SMC4
+SMC1A
+ISG15
+RABEPK
+UBE2S
+DLD
+XPA
+PRUNE
+SNIP1
+MECP2
+UQCRC1
+BAZ1B
+MBD4
+M6PR
+RFC5
+RPS20
+BMP6
+E2F1
+PRKG1
+DMC1
+SNX2
+EGFR
+CX3CL1
+ATP6V0D2
+ZNF207
+RAMP3
+BMPR2
+MLL
+CDC16
+NPM1
+ERCC5
+CCT7
+NBL1
+CDKN1A
+SHPRH
+SLC2A12
+PHF5A
+MCL1
+EXOC7
+AHDC1
+DCAF11
+RPL12
+CER1
+TPT1
+DERL1
+SMAD6
+ATP6V0D1
+ANAPC7
+UBE2E1
+RPA1
+PICALM
+FCN2
+TLR4
+RFC3
+PSMC5
+EPRS
+DGKQ
+RAB34
+BAX
+PI4KB
+NOG
+BMP2
+ZBED4
+SLC19A1
+PDHB
+SLC2A11
+NTHL1
+SLC2A8
+RUVBL2
+SLC2A3
+SLC2A6
+TRAP1
+NCAPH
+CBS
+PAPD5
+CDKN2A
+HMGA2
+POLR1C
+LIG3
+SNX3
+PRKDC
+SMAD1
+USF1
+FBXO22
+PPTC7
+ARHGEF3
+MDM2
+AHSA1
+FOSB
+TF
+WRNIP1
+STAB1
+COPS5
+POU5F1
+ATP6V1B2
+MYC
+PMPCB
+SNX4
+MLH1
+ZNF524
+NDC80
+HSPD1
+UNG
+MSH3
+SMAD7
+SMC3
+CD14
+NET1
+MGP
+CALR3
+NRP1
+ORC2
+CFHR4
+279594
+ACVR2B
+MCPH1
+MAPK3
+GEN1
+CCT8
+FEN1
+PATZ1
+POR
+DNAJC7
+CDK4
+PRC1
+SMAD5
+ISOC1
+RFC4
+TBC1D22B

Day_2/Exercises_and_Tutorials/0.Tutorial/sgd_list_exercise.txt

+CRM1
+SRM1
+GCN3
+NIP7
+GSP1
+HRP1
+TEF2
+TIF35
+YEF3
+MAD2
\ No newline at end of file

Day_2/Exercises_and_Tutorials/1.BinGO_PinGO_ClueGO_EnrichmentMap/ClueGO_with_background/id_list.txt

+EntrezGene ID	GeneName
+51703	ACSL5
+94	ACVRL1
+211	ALAS1
+23092	ARHGAP26
+9459	ARHGEF6
+55589	BMP2K
+1234	CCR5
+253175	CDY1
+9085	CDY1
+203611	CDY1
+9426	CDY1
+253175	CDY1B
+9085	CDY1B
+203611	CDY1B
+9426	CDY1B
+203611	CDY2A
+9426	CDY2A
+253175	CDY2A
+9085	CDY2A
+203611	CDY2B
+9426	CDY2B
+253175	CDY2B
+9085	CDY2B
+9620	CELSR1
+101928723	CHD5
+26038	CHD5
+1131	CHRM3
+1138	CHRNA5
+1259	CNGA1
+10699	CORIN
+1359	CPA3
+1472	CST4
+10800	CYSLTR1
+2191	FAP
+2213	FCGR2B
+54328	GPR173
+338442	HCAR2
+57657	HCN3
+9146	HGS
+8518	IKBKAP
+3559	IL2RA
+10994	ILVBL
+3619	INCENP
+10788	IQGAP2
+3704	ITPA
+4058	LTK
+4063	LY9
+4216	MAP3K4
+5871	MAP4K2
+4593	MUSK
+83463	MXD3
+91807	MYLK3
+8386	OR1D5
+5122	PCSK1
+5833	PCYT2
+5142	PDE4B
+5213	PFKM
+11284	PNKP
+5430	POLR2A
+5510	PPP1R7
+5523	PPP2R3A
+5531	PPP4C
+5538	PPT1
+85481	PSKH2
+11251	PTGDR2
+10076	PTPRU
+25945	PVRL3
+51762	RAB8B
+64080	RBKS
+8607	RUVBL1
+122042	RXFP2
+89777	SERPINB12
+6494	SIPA1
+8877	SPHK1
+7980	TFPI2
+112858	TP53RK
+7179	TPTE
+51175	TUBE1
+5756	TWF1

Day_2/Exercises_and_Tutorials/1.BinGO_PinGO_ClueGO_EnrichmentMap/EnrichmentMap/12hr_topgenes_source.txt

+ZNF259
C13orf3
CA12
SUSD3
OLFML3
NPNT
BCL2L11
PUS1
MCM10
BTG2
TXNRD1
IL1RAP
ASB9
TSEN2
PRSS23
PPAN
BAMBI
LOC93622
NPY1R
LOC283551
EGR3
Magmas
DAB2
SLC3A2
SLC2A10
WFS1
RAB31
MYB
MRPS17
PRMT5
MYADM
DGAT2
GEM
ARMCX6
PGR
FAM60A
C21orf59
HOMER3
PPP1R3C
S100A7
ID1
SLC19A2
NUDCD1
TARP
PGLYRP2
BOP1
FKBP4
PSCA
FAM46A
SNX7
SLC7A5
MYBL1
PDLIM3
SLC2A1
BTG1
KYNU
HSPB8
C12orf24
HIG2
BLNK
SGK3
PCYOX1L
ABCG1
PMP22
DYNLRB1
NOLC1
LOC645722
C9orf89
HARS
REEP5
MAK16
TMEM48
DYNLT3
PRPF4
BAG2
ITGB6
PPIF
TOMM6
IMPA2
ABAT
PTGES
RET
OGFOD1
GRSF1
TMEM164
AREG
MYO1B
CAB39L
SLC25A15
ORAI3
CYB5R1
TNS3
ARRDC4
PA2G4
BIK
DRAM
POLR3H
CCDC85B
CLMN
ARMC10
PTP4A1
CXCL12
TP53INP1
ZDHHC7
ELOVL5
RBL2
DDX21
HSPC111
COMMD3
UTP18
SYTL5
IARS
IGFBP4
DOK7
BCL2L1
C12orf66
UGT1A1
TMEM135
TRGC2
CRELD2
KLHDC2
SLC1A4
LXN
TUFT1
SLC26A2
CCNG1
GEMIN4
RCL1
NP
UGT2B15
MRPL15
SLC7A1
ENO1
GPATCH4
CEP78
PLLP
PKIB
SLC16A6
TRAM2
C20orf3
SLC9A3R1
FGF13
WDR3
SRM
ATP6V1D
EFNA1
NRBP1
TMEM194A
PTRH2
SSR3
PAICS
CAT
CCNG2
TSKU
SC4MOL
PIK3R3
MLF1IP
GRB14
CYBASC3
TMEM59
CELSR2
IL20
C15orf48
SFRS7
SIAH2
DSCC1
LOC100130886
HOXC13
GEMIN5
ANKH
EIF2B2
CDC7
CDKN2B
KIAA1522
RAF1
FAM84B
TMED8
SLC16A1
FLJ13137
PDZK1
FLJ41603
PYCRL
CTNND1
NEDD9
CHCHD10
S1PR3
MXD4
SVIL
DPH2
MRPL16
STX12
C8orf32
ZDHHC8
WSB2
OTUD6B
C1orf163
TIPARP
RHOQ
RFX5
FAIM3
SSBP1
LHX1
PPP6C
PNO1
UTP6
DNTTIP2
RPN1
ITPRIPL2
WDR21A
MREG
PPM1E
YPEL2
SGCG
SIDT2
SOX3
ATP8B2
C10orf2
CACYBP
MRPS2
BXDC1
KLF10
LDLRAD3
NUP107
ARID5B
CDC123
NLN
TIPIN
TET2
RASGRP1
WBP1
TPD52L1
MAGOHB
C14orf138
WDR75
C19orf48
RAPGEF2
NOC3L
EIF3J
CLDN4
FLJ11151
TPBG
DEPDC6
MRTO4
RRP15
STARD10
RNF126
UBXN8
SRPRB
NUDT7
BCAS1
MAP2K1IP1
SLC12A2
POLR3K
WDR12
HBP1
UTP15
CCDC147
MAP1LC3B
NCL
LOC541471
NR3C1
GREB1
RRS1
PDXP
FOXP1
CCT4
MCM6
WBSCR22
MBP
HEBP1
CFL2
DDIT4
ABCA3
BCS1L
C3orf26
TMEM38B
OTUD7B
ASB13
AKR1C2
LONRF2
GLA
FDX1L
LOC729013
RHOD
ID3
SEH1L
NR5A2
PTP4A2
BLVRB
RBM24
TMEM49
RAN
EXOSC2
KIFAP3
ANK3
FASTKD2
PPFIBP2
ABCE1
CREB3L4
NTN4
QSOX2
IGF2R
DUSP10
SLC15A4
UTP20
GCNT1
KIAA1804
FAM83A
STC1
LOC729680
RUSC1
NEIL2
CLN6
TBX2
GAL
NDP
UGDH
ELOVL2
MANEAL
FOSL2
PMAIP1
TRABD
VPS37A
CTA-221G9.4
IGSF3
PPM1K
TIMM17A
HOTAIR
PRAGMIN
LMCD1
KLF9
C2orf55
KCNK6
FER1L3
NRIP1
ZNF766
YPEL5
IL1R1
TMEM138
LITAF
TSC22D3
FLNB
NOC2L
UGT1A3
MARK2
NAT10
SMS
NARS2
KIAA1609
LOC100128881
EXOSC9
ERBB2
NSMCE2
POLR2D
CCDC86
TMEM97
CTSD
MITF
TACC1
PTK6
SLC25A32
TMEM126B
ZFP36L2
TLE1
TYRO3
CCT3
TMPRSS3
MRPS23
HIST3H2A
BRI3BP
TGFBI
PWP2
SOCS2
FAM84A
RILPL2
MFSD11
NME7
FBXL6
NUMA1
ILF3
METTL1
RFTN1
NOL14
GPC6
GPD1L
PNPT1
MOCS2
ACAA2
KIAA0020
RELL1
PMPCB
TGFA
TIMP3
RAB5B
C15orf57
PDSS1
THOC5
NXT1
SDF2L1
GADD45B
DHX33
LRRC1
MRPL36
TJP2
CSE1L
PRMT1
PHB2
COL12A1
FLJ20021
JPH1
CIRH1A
SLC25A25
APPL2
EIF2S1
IFNA21
SNRPD3
FAM107B
MRFAP1L1
LOC374443
CCDC53
COMT
PISD
PODXL
TMEM64
FABP5
WWC1
UCHL5IP
POLDIP2
MCM2
RIOK1
IFT20
AUP1
ERBB3
LMBRD1
ENPP1
VPS13B
GPR77
AQP3
GALNAC4S-6ST
SIPA1L1
MRPL3
MCC
CCDC58
UCK2
AGPAT5
GCH1
SLC25A33
CYP2R1
TRNT1
LOC26010
OSMR
MAFF
RWDD2A
MGP
HMGCL
IFRD2
LAMP1
RPA2
SH3BP5
MRPS12
PXMP4
NAV2
CSTA
PTRH1
PRR15
SLC25A19
SPINK4
CARS
EFCAB4B
RAB3GAP1
TGIF2
FGFBP2
STOM
HSPA9
CCT2
MTMR1
PUS7
DLEU1
UGT1A6
ARNT2
WDR74
ADM
DNAJC1
ULBP2
CD3EAP
DDEFL1
GOLSYN
UMPS
BAG5
C9orf142
KRT19
LOC100132684
LOC100132999
LYAR
AGR3
IMAA
KIAA0831
YPEL3
WDR77
PRDM6
ABCA12
DHRS2
CHAF1A
FEN1
MYEOV2
IDH1
MYC
NOB1
DUS3L
EEF1E1
MAP1B
GPN3
HARBI1
SYTL2
ORC1L
ST8SIA4
ST3GAL4
RHBDF1
LOC375190
RABGAP1
C3orf14
CAP1
OPTN
BOK
OLFM1
MLXIP
C2orf64
GART
IGFBP3
CAB39
\ No newline at end of file

Day_2/Exercises_and_Tutorials/1.BinGO_PinGO_ClueGO_EnrichmentMap/EnrichmentMap/24hr_topgenes_source.txt

+CA12
FAM171B
CELSR2
RFTN1
SOCS2
IL1R1
NPTN
IL20
LXN
SLC16A1
PDZK1
PPP1R3C
ESR1
FDFT1
DRAM
CRIM1
BAMBI
ADM
GPR160
HIST1H3H
TP53INP1
MYC
COLEC12
CAT
NOC3L
TWSG1
PRELID1
RBM24
IGSF3
OLFML3
SUMF2
GEMIN5
IMP4
RANBP1
BTG2
B3GNT5
NPNT
PRSS23
SUSD3
SLC3A2
MRPL15
RAB27B
FARSB
NTN4
TUBB6
SRPR
BCAS3
DGKH
SRM
SLC12A2
UBA5
BIK
ANK3
SEPP1
YPEL3
EPHA4
DGAT2
FAM84A
ARNT2
PLA2G10
SIAH2
IGFBP3
TSC22D3
HSPB8
DCTN4
FLJ12993
RPP40
RHBDF1
ID2
SLC26A2
LOC441046
GBP3
LOC100133182
CTSD
C20orf7
AUH
CHSY1
RUVBL1
UBE2T
SPAG5
LYAR
GALNT12
LHFP
IARS
AKR1C3
SYNGR3
TIPARP
S100A7
FKBP4
SEL1L
FAM84B
ZNF26
WWOX
PTPN18
RTN2
SSBP2
RNF144B
C12orf31
RBL2
LOC100130886
PTPRJ
TSPYL4
PTP4A1
CCNB1
LRRC59
SLC7A5
TIMM8A
TMEM83
MAP1LC3B
CDR2
IHPK2
VAMP8
RAP1GAP
TPBG
DHRS2
SASH1
DNAJB11
FGF13
PLEKHF2
TMEM135
BLNK
NAT10
CCT4
EGR3
PKIA
NAV2
WDR21A
DAB2
PHB
HIG2
TFPI
CXCL12
FABP5
TMPRSS3
AREG
MYBL1
PSMD3
ACPP
CXCR7
MBTPS2
C1orf149
GLA
SPINK4
CCNG2
MRPS6
CREB3L4
PPME1
C12orf45
KCNK6
SGSM2
NLE1
JAK2
PRPF4
CLU
MTHFD1
THRSP
PMP22
EMG1
GSTM3
YPEL2
REEP5
EPB41L4A
TMEM49
PNPT1
RPS26
NDUFAF2
DDX17
PNO1
ABCG1
NME1
LOC374443
CRISPLD2
TPD52L1
NPY1R
HMCN1
ERBB3
MRPS25
PPFIBP2
MYO1B
CANT1
SNAP23
ETNK2
MRPS17
ITPRIPL2
PTPLA
HSPC111
RBM28
NQO1
FAM174B
COBL
RRP15
PRMT5
BCAS1
GAL
FJX1
GLO1
TSPAN1
LITAF
TMEM150
CORO1B
PDCD2L
ZNHIT6
CTSA
B3GALNT2
DDIT4L
HAX1
SH3YL1
CD164
DKK1
MYO6
METTL1
TUFT1
ST8SIA4
TLE1
ACSF2
GADD45B
GPATCH4
PDLIM3
CRBN
CORO2A
RET
LOC113230
SH3BGRL
CHCHD4
SAT1
PLK1
GEMIN6
FHL2
DHRS12
DCN
SLC20A2
ALDH1B1
RHOBTB1
UGT2B15
C2orf55
TXNDC5
NXF1
TMEM164
CDCA8
CTNNB1
APPL2
GOT1
ANO6
SCARB2
ERBB4
ZFP36L2
CEACAM6
LASS2
EIF2B3
IGFBP5
DARS2
BOLA2
RILPL2
HSP90AA1
CDCA5
ECH1
FAM102B
PSMF1
ABCC5
AHSA1
MORC4
LTV1
ARHGAP5
MKI67IP
FAM3B
EFNA1
EPS8
SYTL5
SH3BGRL2
EHBP1
LAMP2
SNRPC
PBXIP1
NPR3
MRPL16
POLR3H
TMEM106C
TMEM32
SLC1A1
PLSCR3
ZWILCH
PEG10
GPR89B
TCF7L2
SYTL2
TADA3L
PPM1K
DPH2
STX12
DDX10
DENND1A
EIF4A1
YPEL5
SCCPDH
PP14571
PRR5
COBLL1
STK17A
FAM110C
SPDEF
RAB26
VKORC1
PXMP4
PODXL
MXD4
TRGC2
GPX3
PPIF
LRP8
RWDD2A
SERPINB1
C1orf115
ARMC10
DNAJC2
TMEM59
EFCAB4B
ID4
RIN2
COQ3
SOX3
WDR75
C12orf66
FAM107B
LIMA1
MB
MBNL2
GPR109B
DDX56
DDIT4
UBE2S
UGT2B17
SERPINA3
FLJ35776
WDR12
RAB2A
LOC440957
MRPL14
CCDC138
OGFOD1
TGFBI
ETFA
BLMH
MEST
C19orf10
C3orf31
SAMD12
VPS37C
NPM3
AURKA
GRB14
PGM5
CENPA
ATP8B1
WDR4
MRPL3
NNT
GATA3
RP1-21O18.1
ASB9
BTG1
SNRPD3
TACSTD2
PSMB5
ARL6IP5
C14orf4
DOK7
ADORA1
PTPLAD1
TOP2B
KIAA0114
PITPNA
C1QBP
ANAPC7
TM9SF2
EFEMP1
GCLM
SPSB3
ADIPOR2
BUB3
MANEAL
ID3
PTS
SFRS7
ASCL1
SGK3
NP
FLAD1
HBP1
PGR
WDSOF1
ATP5G1
MRPS12
PTCD3
AGXT2L2
ASNSD1
APPBP2
ID1
ITGB5
NUDCD1
PAWR
FLJ41603
CEP55
ZC3H15
TIMM17A
PSD3
PRICKLE4
ARHGAP8
DEPDC6
DNAJC1
RMND5B
GRN
CLEC2D
PSMD12
SPCS3
FOXC1
CDCA7
FUT8
MYEOV2
POLR2F
FHL1
BOP1
F11R
CNP
DTYMK
ASS1
IRX2
LOC100133166
SLC2A1
THBS1
\ No newline at end of file

Day_2/Exercises_and_Tutorials/2.ReactomeFI_tutorial/gene_symbols_for_net_0.5_source.txt

+CDK2
+DNAJA3
+TOP3B
+THOC2
+RNF40
+FOLR1
+SLC22A2
+RFC1
+EIF4ENIF1
+PICK1
+MAPK1
+VAMP7
+PCYT2
+GLG1
+HSP90AA1
+XRCC1
+MUS81
+SORL1
+CDK1
+MAP3K7
+CDH1
+FBXO5
+DOT1L
+ERCC2
+DNAJC3
+PIK3CG
+PGM1
+DOHH
+KIF22
+SPECC1L
+GIPC1
+TBP
+BUB1
+RAD51
+TTF2
+CCT5
+NUP155
+BRCA2
+MAD1L1
+FOXH1
+REST
+APMAP
+TBPL2
+LRP1
+RBX1
+CPSF7
+HERC1
+HOXD13
+PES1
+PGAM5
+CUL4A
+PDLIM7
+RNASEH1
+ZBTB24
+SRCAP
+RAD17
+EMC7
+PHF21A
+HMGA1
+BAZ2A
+DLAT
+CTSD
+BMP5
+CALR
+NCAPD3
+RPA2
+ASH1L
+IL6R
+ECHS1
+PGK1
+PRDX5
+WDR31
+H0YFU0_HUMAN
+UGP2
+MAPK14
+MED8
+RNF7
+POLD2
+VCP
+IFT52
+BMP4
+GLYR1
+IGF2R
+BMP7
+ISOC2
+RAE1
+UTP20
+PIK3CB
+POLH
+HSP90AB1
+WRN
+SLC2A4
+SYP
+FCN1
+DKK3
+HFE
+CPS1
+STAB2
+GART
+HSP90B1
+APLF
+OLA1
+TLR2
+LEF1
+SYF2
+MTHFR
+RPS8
+POLD3
+UBE2C
+MLL3
+GREM2
+KCTD10
+CCT2
+GRPEL2
+ANAPC10
+CDC20B
+CCT4
+DNA2
+FCGR1A
+CDC26
+TGFB1
+RGN
+NCAPG
+FZR1
+ATR
+SLC11A2
+CYTH2
+TP53
+PIAS1
+EEA1
+LBP
+TRIM28
+WDFY1
+DDX56
+TMEM135
+CALCRL
+PGK2
+BMPR1B
+SCARF1
+WDFY2
+ARFGAP3
+MSH2
+USF2
+SMC1B
+HAMP
+OBFC1
+ENG
+SMAD4
+HFE2
+TBC1D22A
+MBL2
+ZFYVE16
+LRP3
+VAMP8
+DNAJC13
+TFRC
+ANAPC2
+CCR2
+RAB7A
+FFAR2
+MAF1
+MLL4_HUMAN
+CHTF18
+USP8
+ERCC3
+PSMD14
+ACVRL1
+SRSF6
+MAP2K7
+BLM
+CRCP
+SMAD2
+POLA2
+LIG1
+CDT1
+SLC30A4
+TSC1
+SLC22A15
+PIF1
+MAT1A
+RPA4
+SLC2A13
+RNF20
+FBXW5
+CSTF3
+ATP5B
+BOD1L1
+DDB1
+PSMC4
+ACVR1
+ANAPC11
+VBP1
+TOP2A
+ERCC1
+TOP3A
+DLG1
+RPL23A
+POLD4
+SNX1
+TSC2
+LRP1B
+GPI
+MAD2L1
+SKOR1
+MALSU1
+VPS33B
+SRSF4
+RAP1A
+RIT1
+TLR3
+SYNJ1
+F2RL2
+HDAC1
+SETBP1
+ERCC4
+SLC2A7
+SMURF2
+DVL1
+TTI2
+BRCA1
+ADORA1
+UBE2N
+CDC27
+XPC
+SLC2A10
+TFR2
+BMPR1A
+COG4
+EXO1
+ANAPC4
+AP1G1
+SIRT1
+RAD23B
+GADD45G
+ACTL8
+ATP5A1
+TLR1
+AHCTF1
+GALK2
+IPO4
+MTOR
+ARFGAP2
+PCNA
+TCF3
+C9orf85
+CPSF6
+CCT3
+NSF
+MAPRE2
+SLC2A2
+ZRANB3
+OTC
+ACVR2A
+MSH6
+SLC2A1
+FANCM
+PLK1
+CDC20
+CHRDL1
+CORO1C
+TOP2B
+RAD52
+LRP2
+LPL
+PAPD7
+CCT8L2
+NCAPG2
+HLTF
+SLC2A14
+RFC2
+SSBP1
+SKI
+UBE2D1
+NEIL1
+CLTC
+PLAU
+CLPB
+GNB2L1
+ZBED6
+MAT2A
+SHMT2
+ATP6V0A2
+SKP2
+MAPRE3
+PMS1
+ATP6V1B1
+CLTCL1
+DLG3
+MUTYH
+XPNPEP3
+ANAPC1
+RUVBL1
+ATP5C1
+TADA2B
+BUB1B
+SVOPL
+SERPINE1
+HGS
+ACTR2
+CAD
+TCP1
+PNN
+APEX1
+MAP2K3
+ALDH18A1
+SLC2A5
+PIGM
+ITSN1
+RPL9
+MDH2
+DLST
+MLH3
+JUN
+MXD3
+ADORA2A
+SMAD3
+GRPEL1
+KPNB1
+CYTH1
+AP1S1
+MRC1
+RPLP0
+GDF9
+MSH4
+CKS2
+FSTL1
+APC
+GAPDH
+VPS35
+ERBB2IP
+NCAPD2
+PGM5
+MRPS33
+ISPD
+GALK1
+ING1
+RAMP2
+AADAT
+SMAD9
+PSMC1
+UBE2D3
+PMS2
+PRM1
+SHMT1
+NCAPH2
+IFNG
+FH
+ANAPC5
+FANCD2
+RPA3
+HOXA13
+GREM1
+KIAA0101
+GZMA
+EIF4EBP1
+AHSA2
+AMPH
+SMARCA5
+STK11
+N4BP2
+PSMD1
+TOR1A
+BMPER
+TPR
+ANAPC13
+BUB3
+CDC23
+SMC2
+SLC2A9
+VEGFA
+CTSB
+RAB5A
+BAMBI
+DTL
+APEX2
+PDS5B
+ADM
+POLD1
+WDR76
+CKS1B
+CRP
+SMURF1
+SFTPD
+SMC4
+SMC1A
+ISG15
+RABEPK
+UBE2S
+DLD
+XPA
+PRUNE
+SNIP1
+MECP2
+UQCRC1
+BAZ1B
+MBD4
+M6PR
+RFC5
+RPS20
+BMP6
+E2F1
+PRKG1
+DMC1
+SNX2
+EGFR
+CX3CL1
+ATP6V0D2
+ZNF207
+RAMP3
+BMPR2
+MLL
+CDC16
+NPM1
+ERCC5
+CCT7
+NBL1
+CDKN1A
+SHPRH
+SLC2A12
+PHF5A
+MCL1
+EXOC7
+AHDC1
+DCAF11
+RPL12
+CER1
+TPT1
+DERL1
+SMAD6
+ATP6V0D1
+ANAPC7
+UBE2E1
+RPA1
+PICALM
+FCN2
+TLR4
+RFC3
+PSMC5
+EPRS
+DGKQ
+RAB34
+BAX
+PI4KB
+NOG
+BMP2
+ZBED4
+SLC19A1
+PDHB
+SLC2A11
+NTHL1
+SLC2A8
+RUVBL2
+SLC2A3
+SLC2A6
+TRAP1
+NCAPH
+CBS
+PAPD5
+CDKN2A
+HMGA2
+POLR1C
+LIG3
+SNX3
+PRKDC
+SMAD1
+USF1
+FBXO22
+PPTC7
+ARHGEF3
+MDM2
+AHSA1
+FOSB
+TF
+WRNIP1
+STAB1
+COPS5
+POU5F1
+ATP6V1B2
+MYC
+PMPCB
+SNX4
+MLH1
+ZNF524
+NDC80
+HSPD1
+UNG
+MSH3
+SMAD7
+SMC3
+CD14
+NET1
+MGP
+CALR3
+NRP1
+ORC2
+CFHR4
+279594
+ACVR2B
+MCPH1
+MAPK3
+GEN1
+CCT8
+FEN1
+PATZ1
+POR
+DNAJC7
+CDK4
+PRC1
+SMAD5
+ISOC1
+RFC4
+TBC1D22B