Ellenberg Group

Tools for online image analysis of images acquired with Zeiss confocal microscopes.

Matlab scripts to process files generated by Cellcognition Create a mean statistics for events and grouped classes

Tools to process imaging and FCS data for FCS calibrated imaging

VBA Macro for ZEN black to perform FCS measurements and acquire images for FCS calibrated imaging

Open source framework for segmenting and tracking kinetochores from 4D live-cell imaging data.

Source code related to the publication "Visualization of loop extrusion by DNA nanoscale tracing in single human cells" by Beckwith, Ødegård-Fougner et.al. DOI: https://doi.org/10.1101/2021.04.12.439407

Source code to generate the mitotic cell atlas

Repository to save all code generated and employed in the Mitotic Exit project

Microscopy Pipeline Constructor (MyPiC)

This source code extracts distributions of nups inside core and non-core regions; and was developed to quantify different nups for the manuscript below: Otsuka "A quantitative map of nuclear pore assembly reveals two distinct mechanisms"

This source code extracts distributions of nups inside core and non-core regions; and was developed to quantify different nups for the manuscript below: Otsuka "A quantitative map of nuclear pore assembly reveals two distinct mechanisms"

GUI and functions for controlling the tracebot and automating microscopes.