Skip to content
Snippets Groups Projects
Commit 260aba2e authored by SofiaTorchia's avatar SofiaTorchia
Browse files

mouse nomenclature

parent 53ec23a5
No related branches found
No related tags found
No related merge requests found
......@@ -20,6 +20,17 @@ The repository includes code for the following analyses: <br>
4. Proximity measure
5. Time Spent Hiding
### Nomenclature
In all data files, each mouse pair is identified by their **strain** label (CD1, C57j or Hyb), a label indicating a specific **batch** (B1, B2, ..) followed by the **pair** nomenclature (MS_US, UN_LN, ..) and the **recording time** (T1.1, T1.2, T2.1 or T2.2). <br>
Examples: CD1-B1-MS_US-T1.1, C57j-B4-UN_LS-T2.1, Hyb-B3-MS_US-T2.2
The following **pair** nomenclature has been employed: <br>
unshaved: “UN”; low shaved: “LS”; middle shaved: “MS”; up shaved: “US”. <br>
In addition to this, each mouse is identified by either "M1" or "M2" labels, depending on the order its label occurs in the pair nomenclature. For example, in CD1-B3-MS_US-T2.1, MS corresponds to M1 and US corresponds to M2.
The **recording time** refers to the recording time interval within the early (T1) or the late (T2) experimental phase. Both T1 and T2 intervals are 20 minute-long periods which have been divided up into two consecutive sub-intervals of 10 minutes (T1.1 and T1.2 for T1; T2.1 and T2.2 for T2).
### 1) Average distance and speed
```window_analysis.py``` implements the necessary steps to compute distance between two mice and speed of a mouse over time, while ```plot_window.py``` produces plots for overlapping distance or speed curves extracted from windows centered around all flight onsets. <br>
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment