3. To run the example analysis, simply perform the following steps:
* Change into the *example/input* directory within the Git repository
``cd diffTF/example/input``
* Download the data via the download script
``sh downloadAllData.sh``
* To test if the setup is correct, start a dryrun via the first helper script
``sh startAnalysisDryRun.sh``
* Once the dryrun is successful, start the analysis via the second helper script
``sh startAnalysis.sh``
4. Modify the example analysis to run your own analysis. See Section 3 and 4 in the [Documentation](https://git.embl.de/grp-zaugg/diffTF/blob/master/doc/Documentation.pdf) for further details if you run into troubles or questions.
