@@ -53,6 +53,11 @@ We also put the paper on *bioRxiv*, please read all methodological details here:
Change log
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Version 1.3.2 (2019-07-24)
- Fixed the error "unable to find an inherited method for function ‘assay’ for signature ‘"matrix", "character"’" that arises due to a new implementation of the *normOffsets* function from the *csaw* package in versions above 1.14.1. The Singularity image that comes with *diffTF* still uses csaw version 1.14.1, for which the original implementation works fine, but for newer R installations (that is, *csaw* >= 1.16) the above error is thrown. In the code, the function call is now dependent on the version of the *csaw* package. This was the most common error that was thrown when running *diffTF* without Singularity, and should therefore increase compatibility.
- Minor changes to make the *diffTF* code more compatible for future releases of R (e.g., replacing the deprecated *data_frame* by *tibble*, specifying the package for functions that are defined in different packages)
- updated the *startAnalysis* scripts due to a changed folder structure in the *examples* subfolder
Version 1.3 and 1.3.1 (2019-07-17)
- Various minor changes and small bug fixes as reported by users
- improved the RNA-Seq classification, further information will follow soon.