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Commit 2a7ae41a authored by Jakob Wirbel's avatar Jakob Wirbel
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Update README.md

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# Functional metagenome profiling
6. **lecture** on gene catalogues, HMMs, functional profiling, eggnog
_(Laura: 45 min)_
6. **lecture**: functional metagenomic profiling
7. **demonstration**: mapping to gene catalogues
_(Laura/Jakob: 30 min, ngless -> conda, perhaps on Rhine? Would require ssh/logins)_
7. **demonstration**: mapping to gene catalogues with ngless
8. **practical**: visually explore KEGG maps and pathways
_(Laura/Jakob/Nic: 30 min, heatmap, iPATH? Jakob/Laura: checkout iPATH3)_
8. **practical**: explore KEGG KOs and modules
9. **practical**: build HMM for toxins, annotate gene catalogue/hmmsearch,
metagenomic cutoffs, quantification/vis
_(Laura/Nic: 1.5h)_
____
buffer 15 min (in the worst case 45 min until 18:00)
total: 3.5 h
13:30 - 17:30 (incl 30 min coffee break)
9. **practical**: build HMM for toxins
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